Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq82 385 6e-102 seq140 300 2e-76 >seq82 Length=13639 Score = 385 bits (426), Expect = 6e-102 Identities = 1457/2255 (65%), Gaps = 81/2255 (4%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 || || || |||| ||| || || | || || | | |||||||| || ||||| | | Sbjct 11184 GTAAACTGGATGGCAGCAGAAGCAGCTTGGGTTCTCAAGTAGTACATCCCTGTTTTCAAA 11243 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCGGATC-TGCTA 52925 || | ||| ||||| |||||||| || ||||| || | || | || | Sbjct 11244 CCTTTAGACCACCCGTAGAAATGCATGGAGGTCAGTTTCCCCATTGTTGGGGCCATG--A 11301 Query 52926 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 52985 | |||||||| | ||| ||| |||||| ||||| || ||||| |||||||| | | Sbjct 11302 TGTGGATATTTAGAGAGTGAGATTGATCAATGAAAGCGGATCTGTCAGCAGCCATGTCGA 11361 Query 52986 TGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGA 53044 ||||||||||||| | | |||||||| ||||| || || || | ||| |||| ||| Sbjct 11362 TGATCGTCTTTTGAGACAATTCCCAAACTGTTTTGTACAAGTCTTTCAAT-TCTTGAGGA 11420 Query 53045 AGGTTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 53101 | ||||| | ||||| || || | | || || | || || |||| Sbjct 11421 ATGTTTGGCAAGTGTTGAATGGACCCGTTGTTGGCAATGATGTTTGATTTCATAGCATCG 11480 Query 53102 TTCCATAATTTTCTC-TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTC 53160 ||||| ||| | || ||| |||| || | | ||||| || | ||| ||||| Sbjct 11481 TTCCA-AATGCCCAAATCAACCAAATCTCTTAGCAAGTATGGATTGACAATTTGGAATTC 11539 Query 53161 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 53220 |||||||| ||| | || ||| || || || | ||||| | | | || || | Sbjct 11540 ACCAGACAACGTTCTTCTAGAGTACATGTTTGAAGTGAATGGTTCGAAACATTCGTTGTA 11599 Query 53221 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 53280 ||||| ||||| | |||||||| || ||||| || |||| || || ||||| | Sbjct 11600 ACCCAAGATTTGCGATGTTGATGCTGTTGGCATTGGAGCCAATAACAATGAGTTTCTCAA 11659 Query 53281 ACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA 53339 || || | | ||||| ||| | | || |||||| | ||| | ||| | || | Sbjct 11660 TCCAGTTTCCACA-ATTTTTTCTCTCAAAGATTCCCATTCCCACAAATCAGTTGGAGCTC 11718 Query 53340 CNNNNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTA 53395 ||| | || ||| || | |||| | || | | | || Sbjct 11719 TATCCCACATGTCAAATTGCAAAACACCTTGTGAAGCTGGTGAACCTTGGAA-AGAT--- 11774 Query 53396 TCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATG 53455 | |||||| ||||| | | | || | ||| | || |||||| | | || | Sbjct 11775 TGGTATGGACCTTCTTCCACGGCCATTTCGTTTGAAGATTCCAATGCAGCATGGTACAAT 11834 Query 53456 GTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAG 53515 |||||||| || | |||| || | || |||| | |||||||||| | || Sbjct 11835 GTTTCGAAAATTTGAATATTCAGTTGTTTGGCTTGTTCGGAATCAAATGGAATTCTCAAA 11894 Query 53516 AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 53575 || ||||| | || || || ||||||||||||| | |||||||| |||||| |||| Sbjct 11895 AGCATAAAAGTATCAGCCAAACCTTGAACACCAAGGGCAATAGGTCTGTGTCTCATATTT 11954 Query 53576 GAGATTT---CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632 ||| || ||| ||| | ||| |||||||| | || || | | | || | ||| Sbjct 11955 GAGTTTCTTGCAGTTTCC---ACAGGGTAATAATTTCTGTCAATGACTCTGTTCAAATTT 12011 Query 53633 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---------TTGTCCA 53683 || ||| ||||| | ||||| | | ||| | |||||| | ||| ||| Sbjct 12012 CTTGTAATGACTTTTGCAACATCGTGTAATTTTTGGAAATCATAAGTTTGTTGTTGACCA 12071 Query 53684 TCTATTACAAACAT----------GTTCAATGCAATAGATGCCAGATTACAAACGGC--- 53730 ||| | |||||| | ||| |||||||| |||| ||||||||| || Sbjct 12072 TCTTCTG-AAACATTGATGAAAGCGGGCAAAGCAATAGAAGCCAAATTACAAACAGCAGT 12130 Query 53731 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790 | | || ||| || | ||||| | || ||| || | |||| | ||||| || Sbjct 12131 TTCGTCGTTA---TCTGAATATTCCACAATTTCACAACACAAATTAGATGATTTGATAGT 12187 Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850 ||||||||||| ||||||| ||||||||||| ||||| || |||| ||| ||||| || Sbjct 12188 TCCTAAATTTTTTTGATTAGATTTTTTGTTACAAGCATCTTTGTAAACAATAAATGGTGT 12247 Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGA 53910 ||| |||||| | || | ||| | || || | ||| | | || |||| |||| Sbjct 12248 ACCTGTTTCAGTTTGTGCTTCCAAGATAGCATACCATAATTTTTGTGC-TTTA--ATAGT 12304 Query 53911 TTTG-TATCTCTT--TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCA 53967 ||| || ||||| |||| | ||| | |||||| |||||| || | || | Sbjct 12305 TTTTCTACCTCTTCCTTCTGAAACATATCTATTGTACAATTTTTCAAAATCTGCACCATA 12364 Query 53968 AACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 54027 ||||| || || ||| |||| ||| | | ||| | ||| ||| | || || Sbjct 12365 AACATCACTTAAACCTGGAGCTTCACTTGGAGAAAACAATGTCCAATCTGAATTTTCTTT 12424 Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 ||| || |||||| | ||| |||| ||| | || ||| | |||||| | |||| Sbjct 12425 AACTTTTTGCATAAATAAATCTGGAACCCATAATGCAGGAAACAAATCTCTTGCTCTAAT 12484 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||| || || || ||| || || ||| | || | | ||||||| |||||| || Sbjct 12485 TTCTTCTTTACCATGATTTTTCCGAATATCAATAAAATCAAAAATATCACTATGCCATGG 12544 Query 54148 TTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 54207 ||| || || | | | | | ||||| | ||| || || || ||||| | ||||| || Sbjct 12545 TTCTAAATAAAGAGCAAAAGCACCAGGTCTTTTATTACCACCTTGATCAACATATCTTGC 12604 Query 54208 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 54267 || ||||| ||||||| | ||||||||| | ||||| || | ||||| || || | Sbjct 12605 AGTATTATTGAAAACTCTAATCATTGGAATCAATCCATTAGAAGTCCCATTAGTACCTGC 12664 Query 54268 GATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAGACCTATCCCCCCTGCCATTT 54326 ||||| || | | | ||||||| ||| ||| ||||| || || || || ||| Sbjct 12665 AATATAAGAACCGGTTGATCTAATATTATGAATATGA-AGACCAATACCACCAGCAGTTT 12723 Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386 |||| || || || ||| |||||| |||||||| || || || || ||| || ||| Sbjct 12724 TAGAAATCAAAGCACATTCTTTTAAAGTATCATAAATACCATCAATGGAATCGTCTTTCA 12783 Query 54387 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 54446 | || || ||||| ||||||||| | | ||||| ||||| ||||| || | Sbjct 12784 TAGCAACAAGGAAACATGAAGACATTTGAGGTCTTGGTGTTCCAGCATTGAATAAAGTTG 12843 Query 54447 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTA 54506 |||| || || || || || | ||| | | ||| || || || | || || | Sbjct 12844 GAGATGCATGTGTGAAATATCTCAAAGACATCAAATTATAAGTTTCCAAGACTTTTTCAA 12903 Query 54507 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 54566 |||| | |||||| || || || || | ||| | || || |||||||||||| | | Sbjct 12904 TATCTGAACCATGAATCCCGACAGCAACTCTCATGATCAAATGTTGAGGTCTTTCAGCAA 12963 Query 54567 TCTTGT-TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 54625 | |||| || ||| | | || || ||| ||||||| ||||| ||||||||||| || Sbjct 12964 T-TTGTCCATTGATTCTTAATAAATACGATCTTTCCAATGTTTTGAAACCAAAATAATTA 13022 Query 54626 TATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACT 54685 ||| || |||| || |||| |||| | || | ||| |||| ||| | || Sbjct 13023 TATTGGAAATCTCTATCATAAACAATAGCACTATTTAAAACATCTTTATTTTTTT---CT 13079 Query 54686 ACATCCATGGTAATACTTGA-----AATAATCGGAGAATGTTTCCCATTTTTAGGATTGA 54740 ||| || ||| || | | ||| || ||||| | | |||||||| ||| | Sbjct 13080 ACA-ATTTGATAA-ACGTCATCACTAATCATTGGAGATTTTAATCCATTTTTTTCATTAA 13137 Query 54741 CATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGAT 54800 |||| | ||||||| || |||| | |||| ||||||| |||| ||| |||| || Sbjct 13138 CATAAAAATATAAATCTGAAATGACTTGAGAAAATTGTTTTTTAGTTTGTTTATGTAAAT 13197 Query 54801 TTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG--TTGT-GTAGTACAAG 54857 | || | || ||||| || || | | |||||||| ||||| | || || || || Sbjct 13198 TAGAAATAGCAATTCTTGCAGCCAATGTAGCATAATCAGGATGAATAGTGGTCATATAA- 13256 Query 54858 TGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTC 54917 || | |||| || | || | | |||||||| | || || || || | ||| | | Sbjct 13257 --GCACATGTTTCAGCAGCCAAATTATCCAATTCAATAGTAGTAACACCTTCATAAACAC 13314 Query 54918 CTTGGATAA-CCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAA 54976 | |||| ||| | | || || |||||| ||||| | | | ||| |||||| Sbjct 13315 CAGATATAATTCTTTGT-GTAATAGAAACAGGATCAATATGGTTTGGATCTAAACCATAA 13373 Query 54977 CATAATTTTCTAATACGAGATGTGATTTTATCAAA 55011 |||||| | ||| | ||| |||||||||||||| Sbjct 13374 CATAATCTAGCAATTCTAGAAGTGATTTTATCAAA 13408 >seq140 Length=127049 Score = 300 bits (332), Expect = 2e-76 Identities = 612/900 (68%), Gaps = 18/900 (2%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 |||||| || |||||| || ||| || | |||||| || ||||| ||||||||| | Sbjct 6238 CATAACACCTGCTTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTTTACCTGC 6297 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 |||||| ||||||||||| ||||| ||||||| | ||||||||| || |||| | | | Sbjct 6298 TAATGAAATATTTTCCATAAAATCAAATGGATTTGAAACATTATA-ATATTTTTCATTAC 6356 Query 23951 C-AATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 | ||| || | |||||||| || ||||| || | |||| ||||||| | || || Sbjct 6357 CTAATGCAACCAATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCAGCAT 6416 Query 24010 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 24069 |||| |||| | ||| || | || | || | || || ||||||||| || | Sbjct 6417 TCATACCTAATAAAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAGAAACAG 6476 Query 24070 CGTCTGTTATAATAGATCTTACTGT--TTCTTCACTC-GGTGGATACAATAAATGTTTAA 24126 | || || ||||| |||| | | || || || ||| || ||||||| || Sbjct 6477 CTTCAGTAATAAT---TCTTTCAGCGATTTTTGGATCTGGTTTATTTTCCAAATGTTGAA 6533 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | | |||||| ||||| |||||| || || ||||||| ||| ||||| || |||| Sbjct 6534 ATAATAGACATGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCATTTGAAA 6593 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | || ||||| | || || || | |||||| || | |||||||| || | Sbjct 6594 AAGTCAAACCTGGCATCAACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATGAACCGG 6653 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT 24306 ||||||||| ||||| || || ||||| || | | |||||| || | || | Sbjct 6654 AAAAGAAAACACCTTCAACAGCAGCAAATGCCACCAATCTTTCAGCAAATAATGCATCTT 6713 Query 24307 CATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 ||| | ||||| | |||||| || || || | ||| | || || || || | Sbjct 6714 CATCTTGAATCCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAGTTTCAA 6773 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 ||||||| || | | | |||| || |||||| | ||| ||||| |||||||| Sbjct 6774 TAGCATTGAACAAGAATTCACTTTCTTTTGGATCTTTGATATAAGTATCGATCAAAAGCG 6833 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||| |||| ||| || ||||| || ||||| || ||||| |||||| |||| | Sbjct 6834 AATATGTTTCACTATGGATATTTTCCATCATGATTTGGAACCCGTAAAAACATTTAGCTT 6893 Query 24484 CGGTAATCTGTACTTCTATAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 | | |||||| ||||| || ||| || || | ||||| ||||| || || || || Sbjct 6894 CTGGAATCTGCACTTCAGCACTGAAATTC--TCCACCAAATTCTCATTGACAATCCCATC 6951 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT-- 24599 || || ||||| || || || | || ||| || |||| | | | | | Sbjct 6952 TGAAGCAGCGAAAAATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCT 7011 Query 24600 -TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 24658 |||||||| || | ||||||||| || | ||| | |||||| | ||||||||||| || Sbjct 7012 ATTATTCCAGTCGTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAAAATGAAGC 7071 Query 24659 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 || || ||| || | |||||| ||||| |||| |||||||| | ||||||||| Sbjct 7072 TTCAGCACGTTTGTAAGCTTGCCAGATTTCATGGTATTTGATTGGAAACAAAACAAATCT 7131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719336436400