Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq140 338 6e-88 >seq140 Length=127049 Score = 338 bits (374), Expect = 6e-88 Identities = 634/916 (69%), Gaps = 28/916 (3%) Strand=Plus/Plus Query 15926 TTTGACATAACTGACAT--TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTT 15983 |||| |||||| || | ||||||||| ||| |||||| |||||||||||||| |||| Sbjct 6233 TTTGCCATAAC--ACCTGCTTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTT 6290 Query 15984 TTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTT 16041 | ||| |||||||||||||||||||||||||||| ||| ||| |||| ||| ||||| Sbjct 6291 TACCTGCTAATGAAATATTTTCCATAAAATCAAATGGA--TTTGAAACATTATAATATTT 6348 Query 16042 ATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAA 16101 || || ||| | | |||||||||||| || |||||||| | ||| || ||||| || Sbjct 6349 TTCATTACCTAATGCAACCAATAATCTATCAGCAACAAATTCAACATATTGATTCATCAA 6408 Query 16102 ATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt-ttttttCTA 16160 || ||||| |||| ||| |||||| | ||| ||| | |||| || ||||||| | Sbjct 6409 TGCAGCATTCATACCTAATAAAGAAACAGGCAATGCATCT-TCAAAATATCTTTTTTCAA 6467 Query 16161 TATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGA--GGGTTTAAT-- 16216 || ||| |||||| | || || |||| | | | ||| ||| |||||| | Sbjct 6468 TAGAAACAGCTTCAGTAATAAT---TCTTTCAGCGATTTTT---GGATCTGGTTTATTTT 6521 Query 16217 --AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTA 16274 || |||| ||| | || ||| ||||||||| || | ||||| || |||| || | Sbjct 6522 CCAAATGTTGAAATAATAGACATGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCA 6581 Query 16275 ACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGG 16334 | || |||||||| || | ||||||||| | || ||| || | |||||| || || | Sbjct 6582 ATTCATTTGAAAAAGTCAAACCTGGCATCAACCCCTTTTTCTTTAACCAAAAAATTGCAG 6641 Query 16335 CAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGT 16394 |||||||||| |||||||| | ||||||||| || |||||||| ||||||| ||| | Sbjct 6642 CAAATGAACCGGAAAAGAAAACACCTTCAACAGCAGCAAATGCCACCAATCTTTCAGCAA 6701 Query 16395 ACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGT 16454 | | || || | || |||||| | ||||||| | ||||||| ||| | Sbjct 6702 ATAATGCATCTTCATCTTGAATCCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTG 6761 Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTAT 16514 || | || || ||||| || || | | ||||||| |||| |||||||||| Sbjct 6762 GAATAGTTTCAATAGCATTGAACAAGAATTCACTTTCTTTTGGATCTTTGATATAAGTAT 6821 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574 | || | | ||| |||| ||| ||||| ||||| || || || || |||| Sbjct 6822 CGATCAAAAGCGAATATGTTTCACTATGGATATTTTCCATCATGATTTGGAACCCGTAAA 6881 Query 16575 AGCATCTAGCTTCGGATATTTGTACTTCAG-AGTAAAACCTTTCTGCTAAGTTTTCGTTA 16633 | ||| ||||||| | || || ||||||| | | ||| | || | || || || || Sbjct 6882 AACATTTAGCTTCTGGAATCTGCACTTCAGCACTGAAA-TTCTCCACCAAATTCTCATTG 6940 Query 16634 ACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA 16693 || || ||||| ||| || ||||| || | | |||| ||| | |||| || Sbjct 6941 ACAATCCCATCTGAAGCAGCGAAAAATGCTAAAACTCTACTAATGAAAAATCTTTCATTT 7000 Query 16694 TC--TGAAAGTTTTA-ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTC 16750 || | | | ||| |||||| | |||||| || | ||||| |||||| ||||| Sbjct 7001 TCATTCATTCTATTATTCCAGTCGTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTC 7060 Query 16751 CAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAAC 16810 ||||| ||||| |||| ||| || || ||| || || | ||| || |||||| Sbjct 7061 CAAAATGAAGCTTCAGCACGTTTGTAAGCTTGCCAGATTTCATGGTATTTGATTGGAAAC 7120 Query 16811 ACAACATA-CTTATTT 16825 | |||| | ||| ||| Sbjct 7121 AAAACAAATCTTCTTT 7136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462510236673000