Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06]
305 sequences; 11,383,302 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq140 338 6e-88
>seq140
Length=127049
Score = 338 bits (374), Expect = 6e-88
Identities = 634/916 (69%), Gaps = 28/916 (3%)
Strand=Plus/Plus
Query 15926 TTTGACATAACTGACAT--TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTT 15983
|||| |||||| || | ||||||||| ||| |||||| |||||||||||||| ||||
Sbjct 6233 TTTGCCATAAC--ACCTGCTTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTT 6290
Query 15984 TTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTT 16041
| ||| |||||||||||||||||||||||||||| ||| ||| |||| ||| |||||
Sbjct 6291 TACCTGCTAATGAAATATTTTCCATAAAATCAAATGGA--TTTGAAACATTATAATATTT 6348
Query 16042 ATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAA 16101
|| || ||| | | |||||||||||| || |||||||| | ||| || ||||| ||
Sbjct 6349 TTCATTACCTAATGCAACCAATAATCTATCAGCAACAAATTCAACATATTGATTCATCAA 6408
Query 16102 ATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt-ttttttCTA 16160
|| ||||| |||| ||| |||||| | ||| ||| | |||| || ||||||| |
Sbjct 6409 TGCAGCATTCATACCTAATAAAGAAACAGGCAATGCATCT-TCAAAATATCTTTTTTCAA 6467
Query 16161 TATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGA--GGGTTTAAT-- 16216
|| ||| |||||| | || || |||| | | | ||| ||| |||||| |
Sbjct 6468 TAGAAACAGCTTCAGTAATAAT---TCTTTCAGCGATTTTT---GGATCTGGTTTATTTT 6521
Query 16217 --AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTA 16274
|| |||| ||| | || ||| ||||||||| || | ||||| || |||| || |
Sbjct 6522 CCAAATGTTGAAATAATAGACATGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCA 6581
Query 16275 ACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGG 16334
| || |||||||| || | ||||||||| | || ||| || | |||||| || || |
Sbjct 6582 ATTCATTTGAAAAAGTCAAACCTGGCATCAACCCCTTTTTCTTTAACCAAAAAATTGCAG 6641
Query 16335 CAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGT 16394
|||||||||| |||||||| | ||||||||| || |||||||| ||||||| ||| |
Sbjct 6642 CAAATGAACCGGAAAAGAAAACACCTTCAACAGCAGCAAATGCCACCAATCTTTCAGCAA 6701
Query 16395 ACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGT 16454
| | || || | || |||||| | ||||||| | ||||||| ||| |
Sbjct 6702 ATAATGCATCTTCATCTTGAATCCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTG 6761
Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTAT 16514
|| | || || ||||| || || | | ||||||| |||| ||||||||||
Sbjct 6762 GAATAGTTTCAATAGCATTGAACAAGAATTCACTTTCTTTTGGATCTTTGATATAAGTAT 6821
Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574
| || | | ||| |||| ||| ||||| ||||| || || || || ||||
Sbjct 6822 CGATCAAAAGCGAATATGTTTCACTATGGATATTTTCCATCATGATTTGGAACCCGTAAA 6881
Query 16575 AGCATCTAGCTTCGGATATTTGTACTTCAG-AGTAAAACCTTTCTGCTAAGTTTTCGTTA 16633
| ||| ||||||| | || || ||||||| | | ||| | || | || || || ||
Sbjct 6882 AACATTTAGCTTCTGGAATCTGCACTTCAGCACTGAAA-TTCTCCACCAAATTCTCATTG 6940
Query 16634 ACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA 16693
|| || ||||| ||| || ||||| || | | |||| ||| | |||| ||
Sbjct 6941 ACAATCCCATCTGAAGCAGCGAAAAATGCTAAAACTCTACTAATGAAAAATCTTTCATTT 7000
Query 16694 TC--TGAAAGTTTTA-ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTC 16750
|| | | | ||| |||||| | |||||| || | ||||| |||||| |||||
Sbjct 7001 TCATTCATTCTATTATTCCAGTCGTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTC 7060
Query 16751 CAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAAC 16810
||||| ||||| |||| ||| || || ||| || || | ||| || ||||||
Sbjct 7061 CAAAATGAAGCTTCAGCACGTTTGTAAGCTTGCCAGATTTCATGGTATTTGATTGGAAAC 7120
Query 16811 ACAACATA-CTTATTT 16825
| |||| | ||| |||
Sbjct 7121 AAAACAAATCTTCTTT 7136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462510236673000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |