Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq182 140 2e-28 seq230 105 5e-18 >seq182 Length=55006 Score = 140 bits (154), Expect = 2e-28 Identities = 182/247 (74%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 18085 TTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTG 18142 ||||||||| ||| | | || | | ||| | |||| |||||| || ||||||||||| Sbjct 1907 TTTCTTTTT-TTACCACCACCTCTCAATCTCAAAACCAAGTGAAGGGTGGATTCTTTTTG 1849 Query 18143 AATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCT 18202 |||||||||||| | || ||| ||| ||||||||||||||| || ||| |||| | ||| Sbjct 1848 AATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCT 1789 Query 18203 TTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAG 18261 |||||| || || | ||||| || || |||| | |||| | | || ||| | Sbjct 1788 TTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGATTT-TGGCTTTAACATTGTCAATGG 1730 Query 18262 TGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTT 18321 ||||| || ||| ||| | ||| ||| |||| || ||||| ||||| || ||||||| Sbjct 1729 TGTCAGAGGATTCGACTTCCAAGGTAATGGTTTTACCTGTCAAAGTTTTAACGAAAATTT 1670 Query 18322 GCATTTT 18328 |||| || Sbjct 1669 GCATCTT 1663 >seq230 Length=21327 Score = 105 bits (116), Expect = 5e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||||||||||||||||||||| | || ||| ||| ||||||| Sbjct 13647 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCC 13588 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || ||| |||| | ||||||||| || || | ||||| || || Sbjct 13587 AATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGG 13528 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || ||||| | | | ||||| || ||| ||| | ||||| | || Sbjct 13527 ATTT-TGGCTTTGACGTTATCGATGGTGTCGGAGGATTCGACTTCTAGAGTGATAGTCTT 13469 Query 18296 GCCGGTCAATGTTTTTACAAAA 18317 || || || ||||| |||||| Sbjct 13468 ACCAGTTAAGGTTTTGACAAAA 13447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379342589907225