Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06]
305 sequences; 11,383,302 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq182 140 2e-28
seq230 105 5e-18
>seq182
Length=55006
Score = 140 bits (154), Expect = 2e-28
Identities = 182/247 (74%), Gaps = 5/247 (2%)
Strand=Plus/Minus
Query 18085 TTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTG 18142
||||||||| ||| | | || | | ||| | |||| |||||| || |||||||||||
Sbjct 1907 TTTCTTTTT-TTACCACCACCTCTCAATCTCAAAACCAAGTGAAGGGTGGATTCTTTTTG 1849
Query 18143 AATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCT 18202
|||||||||||| | || ||| ||| ||||||||||||||| || ||| |||| | |||
Sbjct 1848 AATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCT 1789
Query 18203 TTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAG 18261
|||||| || || | ||||| || || |||| | |||| | | || ||| |
Sbjct 1788 TTGTTGGTCAGGTGGGATACCTTCTTTGTCTTGGATTT-TGGCTTTAACATTGTCAATGG 1730
Query 18262 TGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTT 18321
||||| || ||| ||| | ||| ||| |||| || ||||| ||||| || |||||||
Sbjct 1729 TGTCAGAGGATTCGACTTCCAAGGTAATGGTTTTACCTGTCAAAGTTTTAACGAAAATTT 1670
Query 18322 GCATTTT 18328
|||| ||
Sbjct 1669 GCATCTT 1663
>seq230
Length=21327
Score = 105 bits (116), Expect = 5e-18
Identities = 146/202 (72%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| |||||| || ||||||||||||||||||||||| | || ||| ||| |||||||
Sbjct 13647 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCC 13588
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
|||||||| || ||| |||| | ||||||||| || || | ||||| || ||
Sbjct 13587 AATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGG 13528
Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295
|||| | || ||||| | | | ||||| || ||| ||| | ||||| | ||
Sbjct 13527 ATTT-TGGCTTTGACGTTATCGATGGTGTCGGAGGATTCGACTTCTAGAGTGATAGTCTT 13469
Query 18296 GCCGGTCAATGTTTTTACAAAA 18317
|| || || ||||| ||||||
Sbjct 13468 ACCAGTTAAGGTTTTGACAAAA 13447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379342589907225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |