Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq140 141 8e-29 seq182 114 1e-20 seq70 111 1e-19 seq230 95.1 1e-14 >seq140 Length=127049 Score = 141 bits (156), Expect = 8e-29 Identities = 394/598 (66%), Gaps = 11/598 (2%) Strand=Plus/Minus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 |||||||| ||||||| || |||| | || || ||| | |||||| || ||| Sbjct 7131 AGATTTGTTTTGTTTCCAATCAAATACCATGAAATCTGGCAAGCTTACAAACGTGCTGAA 7072 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 || || |||||||| | |||||| | || || || || ||| | ||| ||| || Sbjct 7071 GCTTCATTTTGGACTGCAGAAGAAATCGATCTTTCCAAAGATATCCACGACTGGAATAAT 7012 Query 57657 C---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 | || ||| ||| ||| ||| |||| || || || |||||||| || || Sbjct 7011 AGAATGAATGAAAATGAAAGATTTTTCATTAGTAGAGTTTTAGCATTTTTCGCTGCTTCA 6952 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAAGTGACGG 57771 ||||| ||||| || ||||||||||| | ||| ||||| |||||||| | | | Sbjct 6951 GATGGGATTGTCAATGAGAATTTGGTGG--AGAATTTCAGTGCTGAAGTGCAGATTCCAG 6894 Query 57772 AGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATT 57831 | || | ||| |||||||| || ||| | || ||||| | ||| |||| |||| Sbjct 6893 AAGCTAAATGTTTTTACGGGTTCCAAATCATGATGGAAAATATCCATAGTGAAACATATT 6834 Query 57832 CGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAA-CGTAGAC-TGTTCAACGC 57889 |||| | |||||||| || | || | | | | ||||| | | | ||||||| || Sbjct 6833 CGCTTTTGATCGATACTTATATCAA--AGATCCAAAAGAAAGTGAATTCTTGTTCAATGC 6776 Query 57890 GATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAG 57949 || ||||| || || ||| | || || || ||| | || | |||||| || Sbjct 6775 TATTGAAACTATTCCACAAATCAAAGAAAAAGCTGAATGGGCTATTAGATGGATTCAAGA 6716 Query 57950 CGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 | || || || || || | | || || || || || |||||| | ||||| Sbjct 6715 TGAAGATGCATTATTTGCTGAAAGATTGGTGGCATTTGCTGCTGTTGAAGGTGTTTTCTT 6656 Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 ||| || ||||| ||||| |||||| | |||||| || ||||||| || |||| Sbjct 6655 TTCCGGTTCATTTGCTGCAATTTTTTGGTTAAAGAAAAAGGGGTTGATGCCAGGTTTGAC 6596 Query 58070 GTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 ||| || || ||||| | | || || || || || ||||||||||| || ||| Sbjct 6595 TTTTTCAAATGAATTGATTTGTAGAGATGAAGGGCTACACACTGATTTTGCATGTCTA 6538 >seq182 Length=55006 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || ||| ||||||| ||||| || ||| | || || ||| | Sbjct 1663 AAGATGCAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTCGAATCC 1722 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || | || ||| | ||| ||||| ||||| | || || ||| Sbjct 1723 TCTGACACCATTGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGAC 1782 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| ||||| |||||||| || ||| || || || Sbjct 1783 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 1842 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||||||||||| || ||||| |||| | ||| |||| || ||| Sbjct 1843 AACATTCAAAAAGAATCCACCCTTCACTTGGTTTTGAGATTGAGAGGTGGT 1893 >seq70 Length=20209 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 ||| ||| ||||||||||| || || ||| |||| || ||||| ||||| | || |||| Sbjct 19812 AATAAAAAATGCAAATTTTTGTTAAAACTTTGACTGGGAAAACCATCACTTTGGAAGTTG 19753 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 || | || |||| |||| | ||||| | || |||||| ||||| | || | Sbjct 19752 AATCCTCAGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAAGGGATTCCAC 19693 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | ||||| || | | || || ||||| ||||||||||||||| | || || || Sbjct 19692 CTGACCAACAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACGTTGTCCG 19633 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 | || ||||| ||||| || ||||| || || |||| | ||| |||| || ||| Sbjct 19632 ACTACAACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGTGGT 19577 >seq230 Length=21327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || || || | || || || || ||||| | || || ||| | ||||||| | Sbjct 13447 TTTTGTCAAAACCTTAACTGGTAAGACTATCACTCTAGAAGTCGAATCCTCCGACACCAT 13506 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | |||||| | ||| ||||| ||||| | || || ||||| || | | Sbjct 13507 CGATAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAAAGATT 13566 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || || ||||| ||||| |||||||| || ||| || || || ||||||||||| Sbjct 13567 GATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAA 13626 Query 31381 AGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| |||||||| |||| | ||| |||| || ||| Sbjct 13627 AGAATCCACTCTTCACTTGGTCTTGAGATTGAGAGGTGGT 13666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764700515600