Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq82 394 1e-104 seq140 309 4e-79 >seq82 Length=13639 Score = 394 bits (436), Expect = 1e-104 Identities = 1458/2255 (65%), Gaps = 81/2255 (4%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 || || || |||| ||| || || | || || | | |||||||| || ||||| | | Sbjct 11184 GTAAACTGGATGGCAGCAGAAGCAGCTTGGGTTCTCAAGTAGTACATCCCTGTTTTCAAA 11243 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATC-TGCTA 62163 || | ||| ||||| |||||||| || ||||| || | || | || | Sbjct 11244 CCTTTAGACCACCCGTAGAAATGCATGGAGGTCAGTTTCCCCATTGTTGGGGCCATG--A 11301 Query 62164 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62223 | |||||||| | ||| ||| |||||| ||||| || ||||| |||||||| | | Sbjct 11302 TGTGGATATTTAGAGAGTGAGATTGATCAATGAAAGCGGATCTGTCAGCAGCCATGTCGA 11361 Query 62224 TGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGA 62282 ||||||||||||| | | |||||||| ||||| || || || | ||| |||| ||| Sbjct 11362 TGATCGTCTTTTGAGACAATTCCCAAACTGTTTTGTACAAGTCTTTCAAT-TCTTGAGGA 11420 Query 62283 AGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCA 62339 | ||||| | |||||||| || | | || || | || || |||| Sbjct 11421 ATGTTTGGCAAGTGTTGAATGGACCCGTTGTTGGCAATGATGTTTGATTTCATAGCATCG 11480 Query 62340 TTCCATAATTTTCTC-TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTC 62398 ||||| ||| | || ||| |||| || | | || || || | ||||||||| Sbjct 11481 TTCCA-AATGCCCAAATCAACCAAATCTCTTAGCAAGTATGGATTGACAATTTGGAATTC 11539 Query 62399 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATT 62458 |||||||| ||| | || ||| || || || | ||||| | | || || | Sbjct 11540 ACCAGACAACGTTCTTCTAGAGTACATGTTTGAAGTGAATGGTTCGAAACATTCGTTGTA 11599 Query 62459 TCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAG 62518 ||||| ||||| | |||||||| || ||||| || |||| || || ||||| | Sbjct 11600 ACCCAAGATTTGCGATGTTGATGCTGTTGGCATTGGAGCCAATAACAATGAGTTTCTCAA 11659 Query 62519 ACC-GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAA 62577 || || | | ||||| ||| | | | |||||| | ||| | ||| | || | Sbjct 11660 TCCAGTTTCCACA-ATTTTTTCTCTCAAAGATTCCCATTCCCACAAATCAGTTGGAGCTC 11718 Query 62578 CANNNNNNNNNNNATATTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTA 62633 | | |||| | || ||| || | |||| | || | | | || Sbjct 11719 TATCCCACATGTCAAATTGCAAAACACCTTGTGAAGCTGGTGAACCTTGGAA-AGAT--- 11774 Query 62634 TCATATGGTCCTTCCTTCTCAGCTAGTT---TACAACTCGCCTCTAATGCACCGTAATAA 62690 | ||||| ||||| | | | || | || | || | || |||||| | | || Sbjct 11775 TGGTATGGACCTTCTTCCACGGCCATTTCGTTTGAA---GATTCCAATGCAGCATGGTAC 11831 Query 62691 ATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTT 62750 | ||||| || || | |||| || | || |||| | |||||||||| | Sbjct 11832 AATGTTTCGAAAATTTGAATATTCAGTTGTTTGGCTTGTTCGGAATCAAATGGAATTCTC 11891 Query 62751 AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62810 || || ||||| | || || || ||||||||||||| | |||||||| |||||| || Sbjct 11892 AAAAGCATAAAAGTATCAGCCAAACCTTGAACACCAAGGGCAATAGGTCTGTGTCTCATA 11951 Query 62811 TTAGAGATTT---CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 || ||| || ||| ||| | ||| |||||||| | || || | | | || | | Sbjct 11952 TTTGAGTTTCTTGCAGTTTCC---ACAGGGTAATAATTTCTGTCAATGACTCTGTTCAAA 12008 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---------TCGC 62918 ||||| ||| ||||| | ||||| | | ||| | |||||| | | | Sbjct 12009 TTTCTTGTAATGACTTTTGCAACATCGTGTAATTTTTGGAAATCATAAGTTTGTTGTTGA 12068 Query 62919 CCATCTATTACAAACAT----------GTTCAATGCAACAGATGCCAGATTACACACGGC 62968 |||||| | |||||| | ||| |||| ||| |||| |||||| || || Sbjct 12069 CCATCTTCTG-AAACATTGATGAAAGCGGGCAAAGCAATAGAAGCCAAATTACAAACAGC 12127 Query 62969 ---TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 63025 | | || ||| || | ||||| | || ||| || | |||| | ||||| Sbjct 12128 AGTTTCGTCGTTA---TCTGAATATTCCACAATTTCACAACACAAATTAGATGATTTGAT 12184 Query 63026 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63085 |||||||||||||| ||||||| ||||||||||| ||||| || |||| ||| ||||| Sbjct 12185 AGTTCCTAAATTTTTTTGATTAGATTTTTTGTTACAAGCATCTTTGTAAACAATAAATGG 12244 Query 63086 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 63145 ||||| |||||| | || | ||| | || || | ||| | | | || |||| || Sbjct 12245 TGTACCTGTTTCAGTTTGTGCTTCCAAGATAGCATACCATAATTTTTGTGC-TTTA--AT 12301 Query 63146 AGATTTG-TATCTCCT--TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCC 63202 || ||| || ||| | |||| | ||| | | |||||| ||| || || | || Sbjct 12302 AGTTTTTCTACCTCTTCCTTCTGAAACATATCTATTGTACAATTTTTCAAAATCTGCACC 12361 Query 63203 CCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 63262 |||||| || | ||| |||| ||| | | ||| | ||| ||| | || Sbjct 12362 ATAAACATCACTTAAACCTGGAGCTTCACTTGGAGAAAACAATGTCCAATCTGAATTTTC 12421 Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||| || |||||| | ||| |||| ||| | || ||| | |||||||| ||| Sbjct 12422 TTTAACTTTTTGCATAAATAAATCTGGAACCCATAATGCAGGAAACAAATCTCTTGCTCT 12481 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 | ||| || || || ||| || || ||| | || | | ||||||| |||||| Sbjct 12482 AATTTCTTCTTTACCATGATTTTTCCGAATATCAATAAAATCAAAAATATCACTATGCCA 12541 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 63442 ||||| || || | || | | | ||||| | ||| || || || ||||| | ||||| Sbjct 12542 TGGTTCTAAATAAAGAGCAAAAGCACCAGGTCTTTTATTACCACCTTGATCAACATATCT 12601 Query 63443 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63502 || || ||||| ||||||| | ||||||||| | || || || | ||||| ||||| Sbjct 12602 TGCAGTATTATTGAAAACTCTAATCATTGGAATCAATCCATTAGAAGTCCCATTAGTACC 12661 Query 63503 GGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCA 63561 | ||||| || | | | ||||||| ||| ||| ||||| || || || || Sbjct 12662 TGCAATATAAGAACCGGTTGATCTAATATTATGAATATGA-AGACCAATACCACCAGCAG 12720 Query 63562 TTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGA 63621 ||||||| || || || ||| |||||| || ||||| || || || ||| ||| || Sbjct 12721 TTTTAGAAATCAAAGCACATTCTTTTAAAGTATCATAAATACCATCAATGGAATCGTCTT 12780 Query 63622 TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGG 63681 |||| || || ||||| ||||||||| | | | ||||| ||||| ||||| | Sbjct 12781 TCATAGCAACAAGGAAACATGAAGACATTTGAGGTCTTGGTGTTCCAGCATTGAATAAAG 12840 Query 63682 TAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGT 63741 | ||||| || || || || || | ||| | | ||| || || || | || | Sbjct 12841 TTGGAGATGCATGTGTGAAATATCTCAAAGACATCAAATTATAAGTTTCCAAGACTTTTT 12900 Query 63742 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63801 | ||||| | |||||| || || || || | ||| | || || |||||||||||| Sbjct 12901 CAATATCTGAACCATGAATCCCGACAGCAACTCTCATGATCAAATGTTGAGGTCTTTCAG 12960 Query 63802 CAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 |||||| || ||| | || || || ||| ||||||| ||||| ||||||||||| | Sbjct 12961 CAATTTGTCCATTGATTCTTAATAAATACGATCTTTCCAATGTTTTGAAACCAAAATAAT 13020 Query 63862 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAA 63921 | ||| || |||| || |||| |||| | ||| | ||| |||| ||| | | Sbjct 13021 TATATTGGAAATCTCTATCATAAACAATAGCACTATTTAAAACATCTTTATTTTTTTCTA 13080 Query 63922 CTAT---ATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAA 63978 | || || | | | ||| ||| || ||||| | | |||||||| ||||| Sbjct 13081 CAATTTGATAAACGTCATCACT---AATCATTGGAGATTTTAATCCATTTTTTTCATTAA 13137 Query 63979 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 64038 |||| ||||||| || |||| | |||| ||||||| |||| || |||| || Sbjct 13138 CATAAAAATATAAATCTGAAATGACTTGAGAAAATTGTTTTTTAGTTTGTTTATGTAAAT 13197 Query 64039 TTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG--TTGT-GTAGTACAAG 64095 | || || || ||||| || || | | |||||||| ||||| | || || || || Sbjct 13198 TAGAAATAGCAATTCTTGCAGCCAATGTAGCATAATCAGGATGAATAGTGGTCATATAA- 13256 Query 64096 TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTC 64155 || | |||| || |||| | | |||||||| | || || || || | ||| | | Sbjct 13257 --GCACATGTTTCAGCAGCCAAATTATCCAATTCAATAGTAGTAACACCTTCATAAACAC 13314 Query 64156 CTTGAATAA-CCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAG 64214 | |||| ||| | | || || |||||| ||||| | | | ||| ||||| Sbjct 13315 CAGATATAATTCTTTGT-GTAATAGAAACAGGATCAATATGGTTTGGATCTAAACCATAA 13373 Query 64215 CACAATTTTCTAATACGAGACGTGATTTTATCAAA 64249 || ||| | ||| | ||| |||||||||||||| Sbjct 13374 CATAATCTAGCAATTCTAGAAGTGATTTTATCAAA 13408 >seq140 Length=127049 Score = 309 bits (342), Expect = 4e-79 Identities = 609/896 (68%), Gaps = 10/896 (1%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||| || |||||| || ||| || | |||||| || ||||| ||||| ||| | Sbjct 6238 CATAACACCTGCTTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTTTACCTGC 6297 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 ||||| ||||||||||| |||||||| ||||| | |||||| ||| ||||| | || Sbjct 6298 TAATGAAATATTTTCCATAAAATCAAATGGATTTGAAACATTATAATATTTTTCATTACC 6357 Query 33398 CAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33457 ||| || | |||||||| || || ||||| | |||| ||||||| | || ||| Sbjct 6358 TAATGCAACCAATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCAGCATT 6417 Query 33458 CATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGC 33517 ||| |||| | ||| || | || | || | || || |||||| || || || Sbjct 6418 CATACCTAATAAAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAGAAACAGC 6477 Query 33518 ATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACAT 33577 | || ||||| | | || ||| | | ||| || | ||||||| ||| | Sbjct 6478 TTCAGTAATAATTCTTTCAGCGATTTTTGGATCTGGTTTATTTTCCAAATGTTGAAATAA 6537 Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 | |||||| ||||| ||| || || || ||||||| ||| ||||| || ||||| || Sbjct 6538 TAGACATGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCATTTGAAAAAGT 6597 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | || ||||| | || || || | |||||| || | ||| ||||| |||||||| Sbjct 6598 CAAACCTGGCATCAACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATGAACCGGAAAA 6657 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAA-CCGGCGCTGTC 33754 ||| | ||||| || |||||||| || | | ||| || | |||| | | || Sbjct 6658 GAAAACACCTTCAACAGCAGCAAATGCCACCAATCTTTCAGCAAATAATGCATCTTCATC 6717 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 || ||||| | |||||| || || || | ||| | || || ||||| || || Sbjct 6718 TTGAATCCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAGTTTCAATAGC 6777 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||| || | | | |||| || |||||| | |||||||||||||||||| ||| Sbjct 6778 ATTGAACAAGAATTCACTTTCTTTTGGATCTTTGATATAAGTATCGATCAAAAGCGAATA 6837 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 |||| ||| || ||||| || || || || ||||| |||||| |||| || | Sbjct 6838 TGTTTCACTATGGATATTTTCCATCATGATTTGGAACCCGTAAAAACATTTAGCTTCTGG 6897 Query 33935 AATCTGCACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 |||||||||||| | || ||| || || | ||||| ||||| || || ||||| Sbjct 6898 AATCTGCACTTCAGCACTGAAATTC--TCCACCAAATTCTCATTGACAATCCCATCTGAA 6955 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTA 34049 || || ||||| || || || | || ||| || |||| | | | | | ||| Sbjct 6956 GCAGCGAAAAATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCTATTA 7015 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 ||||| || | ||||||||| || | ||| | |||||| | ||||||||||| || || Sbjct 7016 TTCCAGTCGTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAAAATGAAGCTTCA 7075 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 || ||| || | |||||| ||||| |||| |||||| || | ||||||||| Sbjct 7076 GCACGTTTGTAAGCTTGCCAGATTTCATGGTATTTGATTGGAAACAAAACAAATCT 7131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815198820400