Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq82 405 5e-108 seq140 277 2e-69 >seq82 Length=13639 Score = 405 bits (448), Expect = 5e-108 Identities = 1256/1909 (66%), Gaps = 85/1909 (4%) Strand=Plus/Plus Query 36826 GTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTG 36885 ||||||| || ||||| || ||||| | || ||| ||||| |||||||| | Sbjct 11214 GTTCTCAAGTAGTACATCCCTGTTTTCAAACCTTTAGACCACCCGTAGAAATGCATGGAG 11273 Query 36886 GTCAGTTTTGCGTATGTAGG----ATTATCTATATATATTGTCATTGATTGACTTTGATC 36941 |||||||| | ||| || || || | |||| | | | ||| || |||||| Sbjct 11274 GTCAGTTTCCCCATTGTTGGGGCCATGATGTGGATATTTAGAGAGTGA--GA--TTGATC 11329 Query 36942 TATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAAC 37001 || || || |||||| || ||||| || | || |||||||| | |||||||| Sbjct 11330 AATGAAAGCGGATCTGTCAGCAGCCATGTCGATGATCGTCTTTTGAGACAATTCCCAAAC 11389 Query 37002 CGTTTTATATATTTGTTTTATATTATCTGGTAAATCT-----AAATGTTGAATAGAACCA 37056 ||||| || | | ||| | ||| | || ||| | || |||||||| || || Sbjct 11390 TGTTTTGTACAAGTCTTTCA-ATTCT-TGAGGAATGTTTGGCAAGTGTTGAATGGACCCG 11447 Query 37057 TTATGTAACACAATTGTATTCTTT-ATGTCATTATTCCACAT----ATTTCTACTTATTA 37111 || | | || ||| | ||| || ||| ||||| || | || || | | Sbjct 11448 TTGT-TGGCAATGATGTTTGATTTCATAGCATCGTTCCAAATGCCCAAATCAACCAAAT- 11505 Query 37112 GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTAT 37171 |||| | | || |||||| |||| || || || ||||| || |||||| | | Sbjct 11506 ---CTCTTAGCAAGTATGGATTGACAATTTGGAATTCACCAGACAACGTTCTTCTAGAGT 11562 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | || || ||| ||||||| | | || || | || || ||||| ||||| |||| Sbjct 11563 ACATGTTTGAAGTGAATGGTTCGAAACATTCGTTGTAACCCAAGATTTGCGATGTTGATG 11622 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || |||||||| || | || | |||||||||||| | |||| | | | Sbjct 11623 CTGTTGGCATTGGAGCCAATAACAATGAGTTTCTCAATCCAGTTTCCACAATTTTTTCTC 11682 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGG-GTTCTTTAACCACATATCATATTGTAGA 37350 | | | ||| ||||| ||||| ||||| | ||| | |||||| ||| |||| | | Sbjct 11683 TCAAAGATTCCCATTCCCACAAATCAGTTGGAGCTCTATC-CCACATGTCAAATTGCAAA 11741 Query 37351 ATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTA--GCTA 37408 | ||||| ||||| ||| | | | | | || || || | || | || | Sbjct 11742 ACACCTTGTGAAGCTGGTGAACCTTGGAAAGATTGGTATGGACCTTC--TTCCACGGCCA 11799 Query 37409 GTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATA 37468 |||| |||||| | ||| |||| || | ||||||||||||||| ||||| | | Sbjct 11800 TTTCGTTTGAAGATTCCAATGCAGCATGGTACAATGTTTCGAAAATTTGAATATTCAGTT 11859 Query 37469 TTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCT 37528 ||| |||| |||| ||| |||| | | ||| | ||||| |||||||||||| | Sbjct 11860 GTTTGGCTTGTTCGGAATCAAATGGAATTCTCAAAAGCATAAAAGTATCAGCCAAACCTT 11919 Query 37529 GAACACCGATACCTATGGGTCTATGTTTCTTATTAGA---TCTAGACGATTCTATCACTG 37585 ||||||| | | || ||||| ||| || |||| || ||| | | ||| ||| | Sbjct 11920 GAACACCAAGGGCAATAGGTCTGTGTCTCATATTTGAGTTTCTTGCAGTTTC---CACAG 11976 Query 37586 GATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTC 37645 | |||||||| | || || | | | || | |||| | | | ||| | || || Sbjct 11977 GGTAATAATTTCTGTCAATGACTCTGTTCAAATTTCTTGTAATGACTTTTGCAAC-ATCG 12035 Query 37646 TC-AACTTGTCGAA--CATAAATACGTTATT----AT----TAACAAATTTACT------ 37688 | || || | ||| ||||| | ||| || || | | | ||| | Sbjct 12036 TGTAATTTTTGGAAATCATAAGTTTGTTGTTGACCATCTTCTGAAACATTGATGAAAGCG 12095 Query 37689 --CAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTA-CTAAATTGT-- 37743 ||| | |||||| | | |||||| |||||| ||| || |||| || ||| | Sbjct 12096 GGCAAAGCAATAGAAGCCAAATTACAAACAGCAGTTTCGTC---GTTATCTGAATATTCC 12152 Query 37744 ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTT 37803 | ||| || ||| | |||| ||| | || ||||| ||||| ||||||| |||||| Sbjct 12153 ACAATTTCACAACACAAATTAGATGATTTGATAGTTCCTAAATTTTTTTGATTAGATTTT 12212 Query 37804 TTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATA 37863 || ||||||| |||||| || | ||| | || || ||| ||| |||| || || | Sbjct 12213 TTGTTACAAGCATCTTTGTAAACAATAAATGGTGTACCTGTTTCAGTTTGTGCTTCCAAG 12272 Query 37864 ATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtt--tttttCTT-TGTTTCG 37920 |||| | |||||| || |||||||| | | ||| | | || ||| || | Sbjct 12273 ATAGCATACCATAATTTTTGTGCTTTAA---TAGTTTTTCTACCTCTTCCTTCTGAAACA 12329 Query 37921 TATTCTATA-TATAATTTGTTAAAATCATTCCCCCATA--CATCGCATAATCCTGGACAT 37977 ||| |||| || ||||| | |||||| | | ||||| |||| | ||| |||||| | Sbjct 12330 TAT-CTATTGTACAATTTTTCAAAATC--TGCACCATAAACATCACTTAAACCTGGAGCT 12386 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037 || | |||| | | | | ||| ||| || || || || || |||||||||||| Sbjct 12387 TCACTTGGAGAAAACAATGTCCAATCTGAATTTTCTTTAACTTTTTGCATAAATAAATCT 12446 Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097 || ||||||||||||| ||| |||||| | | |||| |||||| || || ||| ||| Sbjct 12447 GGAACCCATAATGCAGGAAACAAATCTCTTGCTCTAATTTCTTCTTTACCATGATT-TTT 12505 Query 38098 CTTAAGCTTAG-AAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGC 38156 | || | | |||||| || |||||| ||||||||||||| ||||| | | || Sbjct 12506 CCGAATATCAATAAAATCAAAAATATCACTATGCCATGGTTCTAAATAAAGAGCAAAAGC 12565 Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216 || |||||||||| ||| || |||| || |||||| | || ||||| | | ||| | Sbjct 12566 ACCAGGTCTTTTATTACCACCTTGATCAACATATCTTGCAGTATTATTGAAAACTCTAAT 12625 Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 ||| || | | |||||||| | || || |||| | ||||||| ||| | | || Sbjct 12626 CATTGGAATCAATCCATTAGAAGTCCCATTAGTACCTGCAATATAAGAACCGGTTGATCT 12685 Query 38277 TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTT 38336 |||||| || | || || ||||| ||| ||| || || ||||| |||| ||| Sbjct 12686 AATATTATGAATATGAAGACCAATACCACCAGCAGTTTTAGAAATCAAAGCACATTCTTT 12745 Query 38337 TAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGA 38396 ||| |||||| | ||||| || || || || || || | | | ||||| ||| Sbjct 12746 TAAAGTATCATAAATACCATCAATGGAATCGTCTTTCATAGCAACAAGGAAACATGAAGA 12805 Query 38397 CATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTT 38456 ||||||||| ||| ||||| || || ||||| || |||||||||||| |||| || | Sbjct 12806 CATTTGAGGTCTTGGTGTTCCAGCATTGAATAAAGTTGGAGATGCATGTGTGAAATATCT 12865 Query 38457 TTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAG 38516 |||| ||||||| ||||| | || | || ||||| || ||||| || | Sbjct 12866 CAAAGACATCAAATTATAAGTTTCCAAGACTTTTTCAATATCTGAACCATGAATCCCGAC 12925 Query 38517 AGATACCCTCATTAGCATATGTTGTGGTCTTT---CTATTATTTTATT-ATTCTGTTTAA 38572 || || ||||| | || |||||| ||||||| | ||| | ||| |||| |||| Sbjct 12926 AGCAACTCTCATGATCAAATGTTGAGGTCTTTCAGCAATTTGTCCATTGATTC---TTAA 12982 Query 38573 GTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGT 38632 || ||||||| |||| |||||||| | ||||||||| ||||| |||||||||| | Sbjct 12983 -TAAATACGATCTTTCCAATGTTTTGAAACCAAAATAATTATATTGGAAATCTCTATCAT 13041 Query 38633 ATGCTATTACATTATCGATTATATCTCTATGTTTATTTACTTGTTGATA 38681 | | || || ||| | | |||| ||| ||| | ||| |||||| Sbjct 13042 AAACAATAGCACTATTTAAAACATCTTTATTTTTTTCTACAATTTGATA 13090 >seq140 Length=127049 Score = 277 bits (306), Expect = 2e-69 Identities = 602/888 (68%), Gaps = 20/888 (2%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| ||| ||||| | ||| || ||||| || |||||| ||| ||| |||| Sbjct 6251 TTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTTTACCTGCTAATGAAATATTT 6310 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 |||||||| ||| ||||| | ||||| | ||||||| |||||| | ||| Sbjct 6311 TCCATAAAATCAAATGGATTTGAAACATTATAATATTTTTCATTACCTAATGCAACCAAT 6370 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||| | ||| ||| ||| || | ||||||||||| | | Sbjct 6371 AATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCAGCATTCATACCTAATAAA 6430 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTT-CTATATTAACCGCATCAATGATTAT 11577 || || | ||| || |||||| || |||| | ||| ||| || ||| | || || Sbjct 6431 GAAACAGGCAATGCATCT-TCAAAATATCTTTTTTCAATAGAAACAGCTTCAGTAATAAT 6489 Query 11578 CGACGTTATAACTTCCTTAGAT--GGTGGATGTAATAAATGTTTAAACATTAAACACGCA 11635 | || | || ||| ||| || | ||||||| ||| | || ||| ||| Sbjct 6490 T--CTTTCAGCGATTTTTGGATCTGGTTTATTTTCCAAATGTTGAAATAATAGACATGCA 6547 Query 11636 AAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGC 11695 |||||| |||| ||||| ||||||| || | |||||| ||||| || || || ||| Sbjct 6548 AAATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCATTTGAAAAAGTCAAACCTGGC 6607 Query 11696 ATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCC 11755 ||||| || ||| |||| |||||| || |||||||||||||| |||||||| | || Sbjct 6608 ATCAACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATGAACCGGAAAAGAAAACACCT 6667 Query 11756 TCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA--CCTTGTT--GCTAGATATCCA 11811 || ||||| |||||||| || | |||||| || ||| | | || || || ||||| Sbjct 6668 TCAACAGCAGCAAATGCCACCAATCTTTCAGCAAATAATGCATCTTCATCTTGA-ATCCA 6726 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA- 11870 | | | ||||| |||||||| | ||| | | || ||||| ||||| || || | Sbjct 6727 TCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAGTTTCAATAGCATTGAACAA 6786 Query 11871 -AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 ||| || ||||| | |||| | | ||| ||||| || || | ||| |||| Sbjct 6787 GAATTCA--CTTTCTTTTGGATCTTTGATATAAGTATCGATCAAAAGCGAATATGTTTCA 6844 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 ||| ||||||||||| ||||| || || || |||||| || |||| | ||| Sbjct 6845 CTATGGATATTTTCCATCATGATTTGGAACCCGTAAAAACATTTAGCTTCTGGAATCTGC 6904 Query 11990 ACATCCACA-TAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 || || || | |||| | ||| | ||||||||||| ||||| ||||| || || || Sbjct 6905 ACTTCAGCACTGAAAT-TCTCCACCAAATTCTCATTGACAATCCCATCTGAAGCAGCGAA 6963 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT---TTATCCCAATC 12105 |||||||| | | || || || |||| | || | | | | |||| ||| || Sbjct 6964 AAATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCTATTATTCCAGTC 7023 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTT 12165 | | |||||| || | ||| | |||||| | |||||||| || | | |||| Sbjct 7024 GTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAAAATGAAGCTTCAGCACGTTT 7083 Query 12166 ATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || || |||||| ||||| || || || || || | ||| || || Sbjct 7084 GTAAGCTTGCCAGATTTCATGGTATTTGATTGGAAACAAAACAAATCT 7131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523013749200