Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq140 297 2e-75 >seq140 Length=127049 Score = 297 bits (328), Expect = 2e-75 Identities = 591/854 (69%), Gaps = 21/854 (2%) Strand=Plus/Plus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 |||| ||||||| ||||||||| || ||||||||||||||| || || ||||| Sbjct 6233 TTTGCCATAACACCTGCTTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTTTA 6292 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTT 12959 ||| |||| |||||||||||||||||||| || ||| ||| |||| ||| ||||||| Sbjct 6293 CCTGCTAATGAAATATTTTCCATAAAATCAAATGGA--TTTGAAACATTATAATATTTTT 6350 Query 12960 TACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAAT 13019 | |||||| | | || ||||| ||||||||||| || | || || ||||| || Sbjct 6351 CATTACCTAATGCAACCAATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATG 6410 Query 13020 CACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATAT 13079 || ||||| |||| ||| ||||||| || ||| ||| | ||||||| ||| Sbjct 6411 CAGCATTCATACCTAATAAAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAG 6470 Query 13080 CAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGATAGATGC 13138 ||| ||||| ||| || ||| | | || | | ||| |||| | ||| Sbjct 6471 AAACAGCTTCAGTAA-TAATTCTTTCAGCGATTTTTGGATCTGGTTTATTTTCCAAATGT 6529 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | ||| | | ||||||||||||| ||| | ||||||||||||| || | || ||| Sbjct 6530 TGAAATAATAGACATGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCATTT 6589 Query 13199 GAAAATGTTAGACCCGGCAT-AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGA 13257 ||||| || | ||| ||||| || |||| || ||||| |||||| || |||||||| || Sbjct 6590 GAAAAAGTCAAACCTGGCATCAACCCCTTTTTCTTTAA-CCAAAAAATTGCAGCAAATGA 6648 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 ||| ||||| || | |||||||| || ||||| || | ||| |||||| || | || | Sbjct 6649 ACCGGAAAAGAAAACACCTTCAACAGCAGCAAATGCCACCAATCTTTCAGCAAA--TAAT 6706 Query 13318 --ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA 13375 || || | | ||||| | | ||||| | ||||||| ||| | ||| Sbjct 6707 GCATCTTCATCTTGAATCCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATA 6766 Query 13376 TTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATC 13435 |||| || || || || || | | |||| || ||| ||||||||||| ||| Sbjct 6767 GTTTCAATAGCATTGAACAAGAATTCACTTTCTTTTGGATCTTTGATATAAGTATCGATC 6826 Query 13436 AATAAGC-TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 || |||| ||| |||| ||| |||||||||||| |||||||| || |||||||| Sbjct 6827 AA-AAGCGAATATGTTTCACTATGGATATTTTCCATCATGATTTGGAACCCGTAAAAACA 6885 Query 13495 TCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTA 13553 | |||| |||| | ||| ||||| | | | |||| | || | || || || || || | Sbjct 6886 TTTAGCTTCTGGAATCTGCACTTCAGCACTGAAAT-TCTCCACCAAATTCTCATTGACAA 6944 Query 13554 TCCCGTCACTAGCAGCaaaaaaaGC-AAGTATGTGCTTAATAAAttttttttCGTTTTCT 13612 |||| || |||||| ||||| || || | | | |||| || | |||| ||||| Sbjct 6945 TCCCATCTGAAGCAGCGAAAAATGCTAAAACTCTAC-TAATGAAAAATCTTTCATTTTCA 7003 Query 13613 GACA-ACT-TTA-ACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAA 13669 || || ||| ||| || | | |||||| || | ||| | || || | |||||| Sbjct 7004 TTCATTCTATTATTCCAGTCGTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAA 7063 Query 13670 AAAGAAGCAACAGC 13683 || ||||| |||| Sbjct 7064 AATGAAGCTTCAGC 7077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430980797957610