Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq140 224 3e-53 seq82 159 9e-34 seq124 87.8 5e-12 >seq140 Length=127049 Score = 224 bits (248), Expect = 3e-53 Identities = 539/805 (67%), Gaps = 24/805 (3%) Strand=Plus/Minus Query 22214 TTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTG 22273 || ||||||| || ||| | |||| || || || ||||||| | ||| ||||| Sbjct 6974 TTTTAGCATTTTTCGCTGCTTCAGATGGGATTGTCAATGAGAATTTGGTGGAGAATTTCA 6915 Query 22274 CATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAA 22333 ||||| | || ||||| || | |||||| || || | ||||| ||||| |||| Sbjct 6914 GTGCTGAAGTGCAGATTCCAGAAGCTAAATGTTTTTACGGGTTCCAAATCATGATGGAAA 6855 Query 22334 ATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAG--AAGATAAAGACGA 22391 || | || ||||||||||| | || | | ||| || ||||| | | || Sbjct 6854 ATATCCATAGTGAAACATATTCGCTTTTGATCGAT--ACTTATATCAAAGATCCAAAAGA 6797 Query 22392 ACAACGAAA-CTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATT 22450 | | ||| ||| ||| || ||| || |||| | ||| || | || || || | Sbjct 6796 A-AGTGAATTCTTGTTCAATGCTATTGAAACTATTCCACAAATCAAAGAAAAAGCTGAAT 6738 Query 22451 GGGCGCTGAAATGGATGAACAATGAACGTTCATTC---GCGGAACGTCTTATTGCATTTG 22507 |||| | | |||||| | ||||| | |||| || ||| | | | ||||||| Sbjct 6737 GGGCTATTAGATGGATTCAAGATGAAGATGCATTATTTGCTGAAAGATTGGTGGCATTTG 6678 Query 22508 CTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaC 22567 ||| |||||||| |||||||||| || ||||| |||||| |||||| |||| ||| Sbjct 6677 CTGCTGTTGAAGGTGTTTTCTTTTCCGGTTCATTTGCTGCAATTTTTTGGTTAAAGAAAA 6618 Query 22568 GTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTC 22627 | | ||||| ||| | || ||||||||||| || ||| | ||||||| || || | Sbjct 6617 AGGGGTTGATGCCAGGTTTGACTTTTTCAAATGAATTGATTTGTAGAGATGAAGGGCTAC 6558 Query 22628 ATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACT---TCCATATG 22684 | || |||||||| ||| | ||| || | ||| | |||||| |||| | Sbjct 6557 ACACTGATTTTGCATGTCTATTATTTC---AACATTTGGAAAATAAACCAGATCCAAAAA 6501 Query 22685 AAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGG 22744 ||| | || |||||||| | || ||| ||||| || | || || | Sbjct 6500 TCGCTGAAA--GA-ATTATTACTGAAGCTGTTTCTATTGAAAAAAGATATTTTGAAGATG 6444 Query 22745 CGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTG 22804 | || || || | | | ||||| ||||| | || |||| | |||| || |||||| Sbjct 6443 CATTGCCTGTTTCTTTATTAGGTATGAATGCTGCATTGATGAATCAATATGTTGAATTTG 6384 Query 22805 TTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCAT 22864 |||| ||| | |||| || || | ||| ||| ||| ||||||| || ||||||| Sbjct 6383 TTGCTGATAGATTATTGGTTGCATTAGGTAATGAAAAATATTATAATGTTTCAAATCCAT 6324 Query 22865 TTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTG 22924 |||| | |||||| ||||||| | | ||| || ||||||||||| |||||||||||| Sbjct 6323 TTGATTTTATGGAAAATATTTCATTAGCAGGTAAAACCAATTTCTTTGAAAAAAGAGTTT 6264 Query 22925 GTGAATACCAAAAAGCAGGTGTTATGG---ATGCATTGAAT---GATAGTTCAAAACACG 22978 ||| || ||||||||||||||||||| | || ||| || ||| || || | Sbjct 6263 CTGATTATCAAAAAGCAGGTGTTATGGCAAAATCAAGTAATACAGAAAGTGCAGAAGGTG 6204 Query 22979 GATTTACATTAGATGAAGAATTTTA 23003 ||||| || |||||||| ||||| Sbjct 6203 CTTTTACCTTTGATGAAGATTTTTA 6179 >seq82 Length=13639 Score = 159 bits (176), Expect = 9e-34 Identities = 543/836 (65%), Gaps = 14/836 (2%) Strand=Plus/Minus Query 363363 TTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCT 363422 |||||| | ||| || | ||| || ||| || | || || |||| | ||| || | Sbjct 13043 TTATGATAGAGATTTCCAATATAATTATTTTGGTTTCAAAACATTGGAAAGATCGTATTT 12984 Query 363423 ATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTAT 363482 || | |||||||| | |||| |||| | || || ||| || | ||| | |||||| | Sbjct 12983 ATTAAGAATCAATGGACAAATTGCTGAAAGACCTCAACATTTGATCATGAGAGTTGCTGT 12924 Query 363483 TGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCG 363542 || || ||| | | ||| |||| | | ||||| ||||| || | || | | Sbjct 12923 CGGGATTCATGGTTCAGATATTGAAAAAGTCTTGGAAACTTATAA--TTTGATGTCTTTG 12866 Query 363543 TG-TATT-CACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATG 363600 | |||| ||| || || | ||||| | | |||||||||||| | | || || ||| Sbjct 12865 AGATATTTCACACATGCATCTCCAACTTTATTCAATGCTGGAACACCAAGACCTCAAATG 12806 Query 363601 TCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTT 363660 ||||| || || ||| | ||||| ||||||||||| || ||||| | ||| || | Sbjct 12805 TCTTCATGTTTCCTTGTTGCTATGAAAGACGATTCCATTGATGGTATTTATGATACTTTA 12746 Query 363661 AAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTT 363720 || | |||||| | ||||| || | ||| || || |||||| | || || ||| || Sbjct 12745 AAAGAATGTGCTTTGATTTCTAAAACTGCTGGTGGTATTGGTCTTCATATTCATAATATT 12686 Query 363721 CGTGCA--CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCC 363777 | || | | | ||| ||| || || | |||| || ||||| || |||| Sbjct 12685 AGATCAACCGGTTC--TTATATTGCAGGTACTAATGGGA-CTTCTAATGGATTGATTCCA 12629 Query 363778 ATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCA 363835 ||| || | || || | |||||||| || || || || || ||||| | |||| | Sbjct 12628 ATGATTAGAGTTTTCAATAATACTGCAAGATATGTTGATCAAGGTGGTAATAAAAGACC- 12570 Query 363836 AAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGC 363895 || || |||||| | ||| | || || ||| ||||||||||| ||| |||| Sbjct 12569 -TGGTGCTTTTGCTCTTTATTTAGAACCATGGCATAGTGATATTTTTGATTTTATTGATA 12511 Query 363896 TCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGG 363955 | |||||||| || ||||| ||| | | ||| | ||| |||| |||| | |||| Sbjct 12510 TTCGGAAAAATCATGGTAAAGAAGAAATTAGAGCAAGAGATTTGTTTCCTGCATTATGGG 12451 Query 363956 TTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCAC 364015 || | || |||||| | || | | | | ||||| || | |||| ||| Sbjct 12450 TTCCAGATTTATTTATGCAAAAAGTTAAAGAAAATTCAGATTGGACATTGTTTTCTCCAA 12391 Query 364016 ACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGT 364075 ||| ||||||| | ||||| | |||| || | || | ||| | | | Sbjct 12390 GTGAAGCTCCAGGTTTAAGTGATGTTTATGGTGCAGATTTTGAAAAATTGTACAATAGAT 12331 Query 364076 ATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCA 364135 ||| || || |||| | | | || || ||| ||||| || |||||| ||| ||| Sbjct 12330 ATGTTTCAGAAGGAAGAGGTAGAAAAACTATTAAAGCACAAAAATTATGGTATGCTATCT 12271 Query 364136 TGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAAC 364191 |||| | || | ||| ||||| ||||| | ||| | ||||||||| | || ||| Sbjct 12270 TGGAAGCACAAACTGAAACAGGTACACCATTTATTGTTTACAAAGATGCTTGTAAC 12215 >seq124 Length=28590 Score = 87.8 bits (96), Expect = 5e-12 Identities = 202/293 (69%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 111425 AATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTT--GTCGACAAC 111482 ||||||||| |||||||| ||| | || | ||| || |||| ||| || |||| Sbjct 22356 AATTTGGGAAGGAAATGGGTCAAGAGAGTATCTTGACAAGCTTGG-CTTAAGT-GACAGA 22299 Query 111483 GAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTAC 111542 |||||||||||| || || ||||| || ||||| ||| | || ||||| ||||| ||| Sbjct 22298 AGAGAAGGTGATCTTGGTCCTGTTTATGGGTTTCAGTGGAGACATTTTGGAGCAGAATAC 22239 Query 111543 AAAACCATG-CACGACTCATATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATTG 111600 || | |||| ||||| |||||| ||||| |||||| | | ||| ||||| Sbjct 22238 AAGA-CATGTGACGACAACTATGATGGCCAGGGCTACGATCAACTCGCTGAA-GTCATAT 22181 Query 111601 ATCAAATTAAGAACAACCC-AACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 || || | || | ||||| || | | | ||||| | ||||| ||||| || Sbjct 22180 ATAAACTGAAACATAACCCTTACGAC-AGAAGAATTATCTTAAGTGCTTGGAATCCTCCA 22122 Query 111660 GCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT 111712 | || |||||||||| | ||||| |||||| | | | || |||||||| Sbjct 22121 GATTTCAAAAAAATGGCTTTGCCACCTTGTCATGTCTTCAGTCAATTTTATGT 22069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348506738510