Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06]
305 sequences; 11,383,302 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq230 125 6e-24
seq182 120 3e-22
seq70 113 4e-20
>seq230
Length=21327
Score = 125 bits (138), Expect = 6e-24
Identities = 154/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185
||||| || | || || || ||||| ||||| || || || || | ||| || |
Sbjct 13653 CTCAAGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCA 13594
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| ||||||||||| || || | ||||||| ||| ||||| || ||||| ||||||||
Sbjct 13593 TCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTG 13534
Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
||||| ||||| ||||| || | || | ||||||||| || |||||||| ||||| |
Sbjct 13533 TCTTGGATTTTGGCTTTGA-CGTTATCGATGGTGTCGGAGGATTCGACTTCTAGAGTGAT 13475
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAA 45332
|| || || |||| ||||| ||||||
Sbjct 13474 AGTCTTACCAGTTAAGGTTTTGACAAAA 13447
>seq182
Length=55006
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185
||||| || | || || || ||||| ||||| || || || || | ||| || |
Sbjct 1880 CTCAAAACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCA 1821
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| ||||||||||| || || | ||||||| ||| ||||| || || || ||||||||
Sbjct 1820 TCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTTG 1761
Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305
||||| ||||| ||| | || | |||||| || || |||||||| | ||||
Sbjct 1760 TCTTGGATTTTGGCTTTAACATTGTCAATGGTGTCAGAGGATTCGACTTCCAAGGTAATG 1701
Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| || || | |||||| || ||||||||||||
Sbjct 1700 GTTTTACCTGTCAAAGTTTTAACGAAAATTTGCATC 1665
>seq70
Length=20209
Score = 113 bits (124), Expect = 4e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185
||||| || | || || || || ||||||||||| || || ||| | ||| |
Sbjct 19590 CTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAACGTTCTGCCG 19649
Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245
|| ||||| ||||| || || | ||||||| ||| ||||| || ||||| ||||||||
Sbjct 19650 TCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGGAATCCCTTCTTTG 19709
Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|| || || || |||| || | || | |||||| || || || ||||| | ||| |
Sbjct 19710 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCTGAGGATTCAACTTCCAAAGTGAT 19768
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || | |||||| ||||||||||||||
Sbjct 19769 GGTTTTCCCAGTCAAAGTTTTAACAAAAATTTGCAT 19804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452001476737800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |