Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq82 434 1e-116 seq140 417 9e-112 >seq82 Length=13639 Score = 434 bits (480), Expect = 1e-116 Identities = 888/1312 (68%), Gaps = 37/1312 (3%) Strand=Plus/Plus Query 47880 GCTATAGATGCTAGATTACATACAGC---TACCTCATTTGGATTAGTATATTGTATTATT 47936 || ||||| || | |||||| ||||| | | || || || | ||||| | ||| Sbjct 12102 GCAATAGAAGCCAAATTACAAACAGCAGTTTCGTCGTT---ATCTGAATATTCCACAATT 12158 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| ||| | |||| |||||||||| || ||||||| |||||| |||||| Sbjct 12159 TCACAACACAAATTAGATGATTTGATAGTTCCTAAATTTTTTTGATTAGATTTTTTGTTA 12218 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 || || || ||||||| ||||| ||||| || ||||| | || | ||| | ||||| Sbjct 12219 CAAGCATCTTTGTAAACAATAAATGGTGTACCTGTTTCAGTTTGTGCTTCCAAGATAGCA 12278 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | | || || ||| |||| || | || | ||| || | Sbjct 12279 TACCATAATTTTTGTGCTTTAATAGTTTTTCTACCTCTTCCTTCTGAAACATATCTATTG 12338 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 || || || ||||| || | ||||| |||| | ||| || ||| |||| | ||| | Sbjct 12339 TACAATTTTTCAAAATCTGCACCATAAACATCACTTAAACCTGGAGCTTCACTTGGAGAA 12398 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | ||||| |||||| || | ||| ||| | |||||||| |||||| | ||| | Sbjct 12399 AACAATGTCCAATCTGAATTTTCTTTAACTTTTTGCATAAATAAATCTGGAACCCATAAT 12458 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| || | ||| | |||||| || ||| ||| | || |||| | Sbjct 12459 GCAGGAAACAAATCTCTTGCTCTAATTTCTTCTTTACCATGATTTTTCCGAATATCAATA 12518 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | |||||| |||||||||||||||||| | || | |||| |||| |||| Sbjct 12519 AAATCAAAAATATCACTATGCCATGGTTCTAAATAAAGAGCAAAAGCACCAGGTCTTTTA 12578 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA-CAAT 48415 ||||| |||||||| | |||||| |||||||| || ||||||| | |||||| | |||| Sbjct 12579 TTACCACCTTGATCAACATATCTTGCAGTATTATTGAAAACTCTAATCATTGGAATCAAT 12638 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 ||||| || | ||||| || || | ||||||| || | | ||| |||||| ||| Sbjct 12639 -CCATTAGAAGTCCCATTAGTACCTGCAATATAAGAACCGGTTGATCTAATATTATGAAT 12697 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 || ||| |||||||| || ||||||| || | |||||| ||| | |||||||| Sbjct 12698 ATGAAGACCAATACCACCAGCAGTTTTAGAAATCAAAGCACATTCTTTTAAAGTATCATA 12757 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 ||| || || || ||| ||| ||||| | || ||||| ||||||||| || Sbjct 12758 AATACCATCAATGGAATCGTCTTTCATAGCAACAAGGAAACATGAAGACATTTGAGGTCT 12817 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 ||||| | ||| ||||| |||||||||||||| | || || || || | ||| Sbjct 12818 TGGTGTTCCAGCATTGAATAAAGTTGGAGATGCATGTGTGAAATATCTCAAAGACATCAA 12877 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 ||||| ||||| | || || ||||| | ||| || || | || || | ||| Sbjct 12878 ATTATAAGTTTCCAAGACTTTTTCAATATCTGAACCATGAATCCCGACAGCAACTCTCAT 12937 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 | || || ||||||||||||| |||||| ||| ||| | || | ||| ||| |||| Sbjct 12938 GATCAAATGTTGAGGTCTTTCAGCAATTTGTCCATTGATTCTTAATAAATACGATCTTTC 12997 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTG----ATG 48831 ||||||||| ||||||||||| || ||| || || |||||| || ||| | || Sbjct 12998 CAATGTTTTGAAACCAAAATAATTATATTGGAAATCTCTATCATAAACAATAGCACTATT 13057 Query 48832 AA-------TTTATTCTTTCCT-TATGTTTATATACTACATC------CATTACATTTTT 48877 | |||||| ||| || | || ||| || |||| |||| | ||| Sbjct 13058 TAAAACATCTTTATTTTTTTCTACAATTTGATAAACGTCATCACTAATCATTGGAGATTT 13117 Query 48878 TGATATAATTGATTCCTT---GTAAAGATCT---TCT---ACAACATCACTAAATAtttt 48928 | || | || ||| || |||| || | ||| | || | | |||| ||| Sbjct 13118 TAATCCATTTTTTTCATTAACATAAAAATATAAATCTGAAATGACTTGAGAAAATTGTTT 13177 Query 48929 ttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGG 48988 ||| |||| |||||| | |||||| |||| ||||| ||||| ||| |||||||||| || Sbjct 13178 TTTAGTTTGTTTATGTAAATTAGAAATAGCAATTCTTGCAGCCAATGTAGCATAATCAGG 13237 Query 48989 ATGAATTGTTGTACATGT-ACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAG 49047 |||||| || || ||| | | | || |||| || || || |||| ||||| |||||| Sbjct 13238 ATGAATAGTGGT-CATATAAGCACATGTTTCAGCAGCCAAATTATCCAATTCAATAGTAG 13296 Query 49048 TTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTACTGGATCTATATGAT 49107 | |||||| ||| | || |||| | | || ||| || ||||| ||||| | Sbjct 13297 TAACACCTTCATAAACACCAGATATAATTCTTTGTGTAATAGAAACAGGATCAATATGGT 13356 Query 49108 CCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAA 49159 ||| | |||||||||||| | |||||||| || ||||||||||| Sbjct 13357 TTGGATCTAAACCATAACATAATCTAGCAATTCTAGAAGTGATTTTATCAAA 13408 >seq140 Length=127049 Score = 417 bits (462), Expect = 9e-112 Identities = 650/924 (70%), Gaps = 9/924 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || | ||||||||||||||||||||| ||||| || ||||||| ||| Sbjct 6250 TTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTTTACCTGCTAATGAAATATT 6309 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT-CCTAATTCTAATA 18787 |||||||||||||||||||||| |||||||| || ||||| | | |||||| | | | Sbjct 6310 TTCCATAAAATCAAATGGATTTGAAACATTATA-ATATTTTTCATTACCTAATGCAACCA 6368 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 || |||||| || ||||||| || |||| ||||||| || |||||| |||| || Sbjct 6369 ATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCAGCATTCATACCTAATA 6428 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | |||||| | ||||||| || | || || ||| ||| || || || | |||| Sbjct 6429 AAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAGAAACAGCTTCAGTAATAA 6488 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | || | | | | || || | | | ||||| ||| | | |||||||| Sbjct 6489 TTCTTTCAGCGATTTTTGGATCTGGTTTATTTTCCAAATGTTGAAATAATAGACATGCAA 6548 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 ||||| ||||| || || ||||||| ||||||||||| ||||| || ||||| |||| Sbjct 6549 AATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCATTTGAAAAAGTCAAACCTGGCA 6608 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| || |||| |||||||| || || | ||||||||| || |||||||| | ||||| Sbjct 6609 TCAACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATGAACCGGAAAAGAAAACACCTT 6668 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || ||||| || || | |||||| || | ||||| | || ||||||||| Sbjct 6669 CAACAGCAGCAAATGCCACCAATCTTTCAGCAAATAATGCATCTTCATCTTGAATCCATC 6728 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 | | ||||| ||||| || | ||| | ||| || || || |||| ||| || | Sbjct 6729 TAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAGTTTCAATAGCATTGAACAAGA 6788 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | || || | || |||||| | ||| | ||| ||||| | || |||| || Sbjct 6789 ATTCACTTTCTTTTGGATCTTTGATATAAGTATCGATCAAAAGCGAATATGTTTCACTAT 6848 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | |||||||| || || || || |||||||||||| | ||||||| ||||| |||| Sbjct 6849 GGATATTTTCCATCATGATTTGGAACCCGTAAAAACATTTAGCTTCTGGAATCTGCACTT 6908 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 || || || | || |||||||| ||||| || || ||||| ||| || ||||||| Sbjct 6909 CAGCACTGAAATTCTCCACCAAATTCTCATTGACAATCCCATCTGAAGCAGCGAAAAATG 6968 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTAA 19444 |||| || |||| ||| | |||||| | | | | ||||||| || | | Sbjct 6969 CTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCTATTATTCCAGTCGTGGA 7028 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 ||||||| || | ||| | |||||| | |||||||| ||||| || || ||| || Sbjct 7029 TATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAAAATGAAGCTTCAGCACGTTTGTAAG 7088 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAA 19564 | ||| || ||| | |||| || ||||| | ||||||||| |||| ||||| | Sbjct 7089 CTTGCCAGATTTCATGGTATTTGATTGGAAACAAAACAAATCTTCTTTTGTTTTC--CAC 7146 Query 19565 GAATA--GGTTCCATTTTTTGAAA 19586 |||| ||||| |||||| ||| Sbjct 7147 CAATAGCGGTTCGTTTTTTTCAAA 7170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106656960200