Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq140 297 3e-75 seq182 150 3e-31 seq70 141 1e-28 seq230 129 9e-25 >seq140 Length=127049 Score = 297 bits (328), Expect = 3e-75 Identities = 581/847 (69%), Gaps = 16/847 (2%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 ||||||| || || ||| |||| || |||||||| || || ||| | ||||| || Sbjct 6248 GCTTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTTTACCTGCTAATGAAATA 6307 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 | |||||||||||||||||| | |||||||||||||| | |||| | Sbjct 6308 TTTTCCATAAAATCAAATGGATTTGAAACATTATAATATTTTTCATTACCTAATGCAACC 6367 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040 ||||||||||| || |||||||| |||||||| |||||| | ||||||||||| | Sbjct 6368 AATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCAGCATTCATACCTAAT 6427 Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 | | ||| | ||||| || | || ||| || || ||||| || | || Sbjct 6428 AAAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAGAAACAGCTTCAGTAATA 6487 Query 18101 ATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATA-ATATAATAAACA 18159 || || | | | |||||| | | | || ||| | | | | | |||||| ||| Sbjct 6488 ATTCTT-TCAGC---GATTTTTGGATCTGGTTTATTTTCCAAATGTTGAAATAATAGACA 6543 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 |||||||||||||||| ||||||||||| | || ||||| || ||| || || || Sbjct 6544 TGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCATTTGAAAAAGTCAAACC 6603 Query 18220 GGGCATTATACCTCttttt-tttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 ||||| | ||| |||||| |||| |||||| || | || || || |||||||| | Sbjct 6604 TGGCATCA-ACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATGAACCGGAAAAGAAAA 6662 Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGCTCAG 18336 ||| ||||| ||| || || || | |||||||||||||| | || || | || | Sbjct 6663 CACCTTCAACAGCA-GCAAATGCCACCAATCTTTCAGCAAATAATGCATCTTCATCT-TG 6720 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||| | |||||||| ||| || || ||| | || |||||||| Sbjct 6721 AATCCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAGTTTCAATAGCATT 6780 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 ||||| || ||||||| | |||||| |||||||| ||||| || | ||||| | Sbjct 6781 GAACAAGAATTCACTTTCTTTTGGATCTTTGATATAAGTATCGATCAAAAGCGAATATGT 6840 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 |||| ||| || ||||||| || || || | ||||| || |||| || ||| Sbjct 6841 TTCACTATGGATATTTTCCATCATGATTTGGAACCCGTAAAAACATTTAGCTTCTGGAAT 6900 Query 18517 TTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 || | || || | |||| | || |||||||||||||| || || || || | || | Sbjct 6901 CTGCACTTCAGCACTGAAAT-TCTCCACCAAATTCTCATTGACAATCCCATCTGAAGCAG 6959 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTTCC 18632 |||||||||| ||||| |||||||| | ||||||| || || | ||| |||| Sbjct 6960 CGAAAAATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCTATTATTCC 7019 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | || | |||||||| || ||||| | |||||| | |||||||| || | ||| || Sbjct 7020 AGTCGTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAAAATGAAGCTTCAGCAC 7079 Query 18693 GTTTGTA 18699 ||||||| Sbjct 7080 GTTTGTA 7086 >seq182 Length=55006 Score = 150 bits (166), Expect = 3e-31 Identities = 177/238 (74%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || ||||||| ||||| || ||||| ||||| || ||||||||| Sbjct 1663 AAGATGCAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTCGAATCC 1722 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| || || ||| ||||| ||||| |||||||| || || || || Sbjct 1723 TCTGACACCATTGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGAC 1782 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| ||||| || | |||||| |||||||| || || || Sbjct 1783 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 1842 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT-GTAAAA 156056 || || ||||| | || ||||| || || || ||||| ||||| ||| |||||| Sbjct 1843 AACATTCAAAAAGAATCCACCCTTCACTTGGTTTTGAGATTGAGAGGTGGTGGTAAAA 1900 >seq70 Length=20209 Score = 141 bits (156), Expect = 1e-28 Identities = 173/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| ||||||| |||||||| ||||| || || || ||||| ||| Sbjct 19807 AAAATGCAAATTTTTGTTAAAACTTTGACTGGGAAAACCATCACTTTGGAAGTTGAATCC 19748 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || ||||| || || || || || |||||||| || || || || Sbjct 19747 TCAGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAAGGGATTCCACCTGAC 19688 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||||| ||| ||||| ||| | ||||| |||||| || || || || Sbjct 19687 CAACAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACGTTGTCCGACTAC 19628 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| ||| |||| || || || || || ||||| ||||| |||| Sbjct 19627 A--ACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGTGGTG 19576 >seq230 Length=21327 Score = 129 bits (142), Expect = 9e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | ||||| || ||||| || ||||| || ||||||||||| || || | || Sbjct 13448 TTTGTCAAAACCTTAACTGGTAAGACTATCACTCTAGAAGTCGAATCCTCCGACACCATC 13507 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 ||||| ||| ||||| ||||| |||||||| || || || || |||||||||||| Sbjct 13508 GATAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAAAGATTG 13567 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| ||||| || | |||||| |||||||| || || || || || ||| Sbjct 13568 ATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAAA 13627 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 || | || ||||| || || || ||||| ||||| ||||| Sbjct 13628 GAATCCACTCTTCACTTGGTCTTGAGATTGAGAGGTGGTGT 13668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731869209738000