Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq140 246 6e-60 seq230 165 2e-35 seq182 150 4e-31 seq70 132 9e-26 >seq140 Length=127049 Score = 246 bits (272), Expect = 6e-60 Identities = 527/788 (67%), Gaps = 18/788 (2%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 || ||||||| || | ||||||||||||||||||| ||||||||||||||| Sbjct 6294 CTGCTAATGAAATATTTTCCATAAAATCAAATGGATTTGAAACATTATAATATTTTTCAT 6353 Query 49633 CTATC-AATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 || | ||| || ||||||||||| || ||||||||||||||||| ||| ||| || Sbjct 6354 -TACCTAATGCAACCAATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCA 6412 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||||| ||||| || || |||||||| |||| | || |||||| || Sbjct 6413 GCATTCATACCTAATAAAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAGAA 6472 Query 49752 acagcttgtttaattatcataattatattattttttgataa--tttatatttaatatgat 49809 ||||||| |||| || | || |||||| ||| ||||| || | ||| | Sbjct 6473 ACAGCTTCAGTAATAATTCT--TTCAGCGATTTTTGGATCTGGTTTATTTTCCAAATGTT 6530 Query 49810 tcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCAT 49869 | ||| || ||||||||||||||| |||| || || || ||| | || ||||||| Sbjct 6531 G---AAATAATAGACATGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCAT 6587 Query 49870 TACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 | |||||| || |||||||| || || | || || | |||||| |||| ||||| Sbjct 6588 TTGAAAAAGTCAAACCTGGCATCAACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATG 6647 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 || |||||||| | ||| || ||| |||||||| | | |||| | |||| | | Sbjct 6648 AACCGGAAAAGAAAACACCTTCAACAGCAGCAAATGCCACCAATCTTTCAGCAAATAATG 6707 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 | |||||| ||||| | |||||||| || ||||||| |||||| || ||| Sbjct 6708 CATCTTCATCTTGAATCCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAG 6767 Query 50050 TTTCTATAGCTTT---AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNA 50106 |||| ||||| || || |||||| |||| | | Sbjct 6768 TTTCAATAGCATTGAACAAGAATTCA---CTTTCTTTTGGATCTTTGATATAAGTATCGA 6824 Query 50107 TTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATT 50166 | || | ||||| ||||| ||| | | |||||| ||||| || ||||| Sbjct 6825 TCAAAAGCGAATATGTTTCACTATGGATATTTTCCATCATGATTTGGAACCCGTAAAAAC 6884 Query 50167 GTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAA 50226 | | ||||||| | ||| ||||| | | ||| || || ||||||||| |||| Sbjct 6885 ATTTAGCTTCTGGAATCTGCACTTCAGCACTGAAATTCTCCACCAAATTCTCATTGACAA 6944 Query 50227 TACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTT 50286 | ||||| || || ||||| ||||||||||| |||| ||| | ||||||| || | Sbjct 6945 TCCCATCTGAAGCAGCGAAAAATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCAT 7004 Query 50287 ---TTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAA 50343 || ||| | ||| | | ||| || || | ||| | ||||||| ||||||| Sbjct 7005 TCATTCTATTATTCCAGTCGTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAAA 7064 Query 50344 ATGATGCT 50351 |||| ||| Sbjct 7065 ATGAAGCT 7072 >seq230 Length=21327 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||||| ||||||||| | | || || || || | ||| | ||||| || | Sbjct 13676 GTTCAATAACACCACCTCTCAATCTCAAGACCAAGTGAAGAGTGGATTCTTTTTGAATGT 13617 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||| || |||| |||| ||||||||||||||||||||||| ||||| |||| Sbjct 13616 TGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTT 13557 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || |||||||| ||||| ||||| ||| || ||| || | || | Sbjct 13556 GGTCAGGTGGAATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTATCGATGGTGTCGG 13497 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 | ||||| ||||||||||| || || ||||||||||| ||||| | ||| Sbjct 13496 AGGATTCGACTTCTAGAGTGATAGTCTTACCAGTTAAGGTTTTGACAAA 13448 >seq182 Length=55006 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || | || | ||||| || || || ||||| Sbjct 1893 ACCACCTCTCAATCTCAAAACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCAGA 1834 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| ||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 1833 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 1774 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| ||||| ||| ||||| || | || || ||||| || Sbjct 1773 GATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTGTCAATGGTGTCAGAGGATTCGAC 1714 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| | |||||||||||||| || || ||||||| || || ||||| || Sbjct 1713 TTCCAAGGTAATGGTTTTACCTGTCAAAGTTTTAACGAAAATTTGCATCTT 1663 >seq70 Length=20209 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || | || | ||| || ||| || || || || Sbjct 19577 ACCACCTCTCAATCTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 19636 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| | || ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct 19637 CAACGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGG 19696 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| || || || || || || || || | ||||| ||||| || Sbjct 19697 AATCCCTTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGAGGATTCAAC 19756 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| | ||| |||||||| ||||| || ||||||| ||| || |||||||| Sbjct 19757 TTCCAAAGTGATGGTTTTCCCAGTCAAAGTTTTAACAAAAATTTGCATTTT 19807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984476152836750