Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq82 284 4e-71 seq176 111 5e-19 seq104 102 2e-16 seq101 96.9 1e-14 >seq82 Length=13639 Score = 284 bits (314), Expect = 4e-71 Identities = 659/988 (67%), Gaps = 19/988 (2%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||||||| |||| |||||| || ||||| || | || || ||||| ||||| |||| Sbjct 12103 CAATAGAAGCCAAATTACAAACAGCAGTTTCGTCGTTATCTGAATATTCCACAATTTCAC 12162 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 | |||| ||||| ||||| || |||||||| || || |||||||| ||||||||| Sbjct 12163 AACACAAATTAGATGATTTGATAGTTCCTAAATTTTTTTGATTAGATTTTTTGTTACAAG 12222 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 |||| ||||| | ||| |||| || ||||| || | ||||| |||| || || Sbjct 12223 CATCTTTGTAAACAATAAATGGTGTACCTGTTTCAGTTTGTGCTTCCAAGATAGCATACC 12282 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTA--TCTGCCTTCCGACTCATATTTCATATA 155824 | | | | || ||||| || || || ||| ||||| || ||||| | | || Sbjct 12283 ATAATTTTTGTGCTTTAATAG--TTTTTCTACCTCTTCCTTCTGAAACATATCTATTGTA 12340 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG----CACTTATCGGGGC 155880 || || |||| |||| ||| |||||| | || || ||||| || Sbjct 12341 CAATTTTTCAAAATCTGCACCATAAACATCACTTAAACCTGGAGCTTCACTT----GGAG 12396 Query 155881 AAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAA 155940 |||||| | |||| | ||| | | || | |||||||| ||| |||| | Sbjct 12397 AAAACAATGTCCAATCTGAATTTTCTTTAACTTTTTGCATAAATAAATCTGGAACCCATA 12456 Query 155941 TAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000 ||| || | || ||||| | || || | || ||||| ||||| | || | Sbjct 12457 ATGCAGGAAACAAATCTCTTGCTCTAATTTCTTCTTTACCATGATTTTTCCGAATATCAA 12516 Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCT 156060 || || ||||||| ||| ||| || | ||| | ||||||| |||| || | Sbjct 12517 TAAAATCAAAAATATCACTATGCCATGGTTCTAAATAAAGAGCAAAAGCACCAGGTCTTT 12576 Query 156061 TG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 | ||||| ||||| ||||| | ||||| |||||||| || | | ||| ||||| | Sbjct 12577 TATTACCACCTTGATCAACATATCTTGCAGTATTATTGAAAACTCTAATCATTGGAATCA 12636 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177 ||||| ||||| ||||| || || ||||| ||||| | ||| | || |||||||| Sbjct 12637 ATCCATTAGAAGTCCCATTAGTACCTGCAATATAAGAACCGGTTGATCTAATATTATGAA 12696 Query 156178 TATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237 |||| || ||||||||||| | ||||||||| ||| ||||| |||| ||||| Sbjct 12697 TATGAAGACCAATACCACCAGCAGTTTTAGAAATCAAAGCACATTCTTTTAAAGTATCAT 12756 Query 156238 AAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTC 156297 ||||||| ||||| ||||| |||| ||| | | || | || ||| | |||||||| Sbjct 12757 AAATACCATCAATGGAATCGTCTTTCATAGCAACAAGGAAACATGAAGACATTTGAGGTC 12816 Query 156298 GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATAT 156357 |||||||||||| ||||||| || || | |||||| | ||||| | |||||| Sbjct 12817 TTGGTGTTCCAGCATTGAATAAAGTTGGAGATGCATGTGTGAAATATCTCAAAGACATCA 12876 Query 156358 AATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCA 156417 ||| || || ||| | || |||| || || || ||||| | || || || |||| Sbjct 12877 AATTATAAGTTTCCAAGACTTTTTCAATATCTGAACCATGAATCCCGACAGCAACTCTCA 12936 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 | || ||| ||||| | || |||| ||||| |||| | | || | | || Sbjct 12937 TGATCAAATGTTGAGGTCTTTCAGCAATTTGTCCATTGATTCTTAATAAATACGATCTTT 12996 Query 156478 CCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT--CATTTC 156535 ||| ||||| || || ||||||| | | | ||||| | | ||| |||| || | Sbjct 12997 CCAATGTTTTGAAACCAAAATAATTATATTGGAAATCTCTATCATAAACAATAGCACT-- 13054 Query 156536 ATCTAACTCAACCTGATATTTTTCCACA 156563 || ||| || | | || |||||| ||| Sbjct 13055 ATTTAAAACATCTTTATTTTTTTCTACA 13082 >seq176 Length=99452 Score = 111 bits (122), Expect = 5e-19 Identities = 332/499 (67%), Gaps = 15/499 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| || |||| | | || ||| || || || || |||||||| || || Sbjct 8009 CTGTCAAATCTTCCAGGTCTCATCAAAGCTTTATCCAAAATGTCCGCTCTGTTGGTACCT 8068 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA-ATTTGATT 288968 ||||| |||||||| ||| | | | || || |||| | | || | ||||| Sbjct 8069 GCCAAAACAACAATGTGTTCAGACGGAGTGAACCCGTCCA-ATTCAACAAGCAACTGATT 8127 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 | ||| ||| ||||| || ||||| |||| || ||| | | ||| || ||| Sbjct 8128 CAATGTGGTTTCTCTTTCTTCGTTTGAGTTGCTTGCATTACC--ACTTCCTC-TTGCTTT 8184 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| ||||| ||||||||||| | ||| || | || |||||| || Sbjct 8185 ACCAATGGCATCGATTTCATCAATGAAAATGATACATGGGGCGTTCATTCTCGCGGTTTT 8244 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || ||||| || | || || |||| ||||||| ||||||| ||||| || || | Sbjct 8245 GAACAAGTCTCTGACTCTTGAAGCACCAACACCAACAAACATTTCAACAAACTCGGACCC 8304 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || || | |||| ||| ||||| || || || | |||| | ||||| Sbjct 8305 AGAAACAGAGAAAAATGGAACACCGGCTTCACCGGCAGTAGCTTTAGCCAACAAAGTCTT 8364 Query 289209 ACCTGTTCCAGGTGGTCC-CTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 || || || || || || ||| || | | | || |||| | ||| || ||| || | Sbjct 8365 CCCGGTACCTGGGGGACCACTC-AAAATAGCACCTCTTGGAATTTTGGCACCA--AGTTT 8421 Query 289268 T--ATATTTCTCAGGGCTCTTT--AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | ||||||| || | ||| |||||||| |||| ||| || ||| | |||||| Sbjct 8422 TTCGTATTTCT-TTGGATGTTTCAAAAAATTC-ACAAACTCCATAATTTCTTCTTTTGCT 8479 Query 289324 TCATCACATCCTGCTACAT 289342 |||||||| ||||| |||| Sbjct 8480 TCATCACAACCTGCAACAT 8498 >seq104 Length=202723 Score = 102 bits (112), Expect = 2e-16 Identities = 316/479 (66%), Gaps = 24/479 (5%) Strand=Plus/Minus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTT-AAA 288941 || || ||||| ||||| ||||| | ||||| |||| || |||| |||| || ||| Sbjct 37646 TCCAAAATATCTGCTCTATTTGTCCCAGCCAAAACAATGATTTGTTCG-TTTGTTTCAAA 37588 Query 288942 TCCATCCATACTTGTTAAAATTTGATT--AAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || ||||| || | || || ||||| || || ||||| ||||||| |||| Sbjct 37587 ACCGTCCATTTCCACTAGCAACTGGTTCAAAGTGCTT--TCTCTTTCGTCATTTGCACCT 37530 Query 289000 CTTGAATC------ACCC----GAATCGCTCCttt--ttttACCAACAGCATCAATTTCG 289047 | ||| | ||| | || | ||| | || | |||| ||||||||| || Sbjct 37529 CCAGAACCCATACCACCGCCTTGTTTCCCGCCTCTGCTTCTCCCAATAGCATCAATCTCA 37470 Query 289048 TCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGG 289107 ||||||||||| | || |||| ||| | || | ||||| || || | ||| | Sbjct 37469 TCAATGAAAATAATGCATGGAGTCATTTCCCGAGCTTTGGCAAACAAGTCCCGTACTCTC 37410 Query 289108 GATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTT 289167 ||||| |||| ||| ||| ||||||| ||||| ||||| |||| || | ||| | Sbjct 37409 GATGCACCAACACCTACAAACATTTCCACAAACTCAGACCCGGAAACCGACAAGAAGGGA 37350 Query 289168 ACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC- 289226 || |||||| || || || | |||| | || || ||||| || || ||||| Sbjct 37349 ACTCCTGCTTCTCCCGCAGTGGCTTTGGCCAACAACGTTTTCCCTGTACCTGGAGGTCCA 37290 Query 289227 CTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT--TATATTTCTCAGGGCTC 289284 ||| || | | || |||| | ||||| | || | || | || ||||| || Sbjct 37289 CTC-AAAATGGCGCCTCTTGGAA--TTTGCGCTCCCAATTTGGTAAACTTTTCAGGAGTC 37233 Query 289285 TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || ||||| || |||| |||| || ||| | |||||||| || || ||||| || || Sbjct 37232 TTCAAAAACTCAACAAATTCCATAATTTCTTGCTTTGCCTCGTCGCACCCTGCCACGTC 37174 >seq101 Length=71874 Score = 96.9 bits (106), Expect = 1e-14 Identities = 176/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || |||||| ||||||| | |||| ||||| | |||||||||||||| Sbjct 53658 ATCATAGTGAACCATAATATCTTCCAAAGCTTTGACCAAACGTCTTTGAATATAACCAGT 53717 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || |||||| ||||| |||||||||| || | | ||| |||||||| || ||||| Sbjct 53718 TTCAGCTGTTTTCACAGCAGTATCAATTAACCCTTCTCTACCTCCCATAGCGTGAAAGAA 53777 Query 302673 TAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 | |||| ||| || | || | ||| | | ||| |||| || ||||| | || Sbjct 53778 AAATTCTTGTGGT-GTCAAACCTCTCAA-ATATGAGTTCTCCACAAAACCTTTAGATTCA 53835 Query 302731 GGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATA 302790 || || | ||| |||| || ||||| | || || | || | || |||| ||| Sbjct 53836 GGAGAGTAATCGTCTTTGGAGAAATGTGGTAAAGTTCTATCAGCAAACCCAAATGGAATA 53895 Query 302791 CGCTTTCCATCAAC 302804 || || || ||||| Sbjct 53896 CGTTTACCTTCAAC 53909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471811848412785