Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq182 178 3e-39 seq230 152 1e-31 seq70 140 6e-28 >seq182 Length=55006 Score = 178 bits (196), Expect = 3e-39 Identities = 183/238 (77%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 ||| | ||| ||| |||||||| | || ||| ||||| || || |||||||| || || | Sbjct 1902 TTTTTTACC-ACCACCTCTCAATCTCAAAACCAAGTGAAGGGTGGATTCTTTTTGAATGT 1844 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 | || ||||| | | ||||||| ||||| | |||||| ||||||||||| | |||||||| Sbjct 1843 TGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTT 1784 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 | || || || || ||||| || ||||| || || ||||| ||||| ||||| || ||| Sbjct 1783 GGTCAGGTGGGATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTGTCAATGGTGTCAG 1724 Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| |||||||| || || || || |||||||| || || || || || ||||| Sbjct 1723 AGGATTCGACTTCCAAGGTAATGGTTTTACCTGTCAAAGTTTTAACGAAAATTTGCAT 1666 >seq230 Length=21327 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| ||||| |||||||| || || || || ||||| Sbjct 13666 ACCACCTCTCAATCTCAAGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGA 13607 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | ||||||| ||||| | |||||| ||||||||||| | ||||||||| || || || Sbjct 13606 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 13547 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || ||||| || || ||||| || || || || || || | ||| || Sbjct 13546 AATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTATCGATGGTGTCGGAGGATTCGAC 13487 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 ||| | ||| || ||||| || || || || || ||||| Sbjct 13486 TTCTAGAGTGATAGTCTTACCAGTTAAGGTTTTGACAAA 13448 >seq70 Length=20209 Score = 140 bits (154), Expect = 6e-28 Identities = 176/238 (74%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || ||| ||||| || || || || || || || || || || || Sbjct 19577 ACCACCTCTCAATCTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 19636 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | |||| |||||||| | ||||| |||||||| || | ||||||||| || || || Sbjct 19637 CAACGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGG 19696 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTA 82761 || ||||| || || || ||||| | || || || || || || || | ||| ||| | Sbjct 19697 AATCCCTTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTC-TGAGGATTCAA 19755 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819 |||||||||| || || || || ||||| || || ||||| || |||||| || |||| Sbjct 19756 CTTCCAAAGTGATGGTTTTCCCAGTCAAAGTTTTAACAAAAATTTGCATT-TTTTATT 19812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981823363203395