Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq82 289 7e-73 seq140 163 7e-35 seq101 113 1e-19 seq166 91.5 3e-13 >seq82 Length=13639 Score = 289 bits (320), Expect = 7e-73 Identities = 582/860 (68%), Gaps = 5/860 (1%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||||||||| | ||| | | |||||| | | ||||||| | || | Sbjct 13018 TATTTTGGTTTCAAAACATTGGAAAGATCGTATTTATTAAGAATCAATGGACAAATTGCT 12959 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | |||||||| || | | | ||||| | || |||||||| |||||| || Sbjct 12958 GAAAGACCTCAACATTTGATCATGAGAGTTGCTGTCGGGATTCATGGTTCAGATATTGAA 12899 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCTAC 110482 || | ||| |||| || | | | | || | | | ||||| |||| || Sbjct 12898 AAAGTCTTGGAAACTTATAATTTGATGTCTTTGA-GATATTTCACACATGCATCTCCAAC 12840 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 |||| || || ||||| || ||| || |||| || || ||| | | || || Sbjct 12839 TTTATTCAATGCTGGAACACCAAGACCTCAAATGTCTTCATGTTTCCTTGTTGCTATGAA 12780 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || ||||| ||||| |||||||||||| || | |||||| |||| | |||||||||| Sbjct 12779 AGACGATTCCATTGATGGTATTTATGATACTTTAAAAGAATGTGCTTTGATTTCTAAAAC 12720 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| |||| ||||| ||||| | |||| || | |||| ||| Sbjct 12719 TGCTGGTGGTATTGGTCTTCATATTCATAATATTAGATCAACCGGTTCTTATATTGCAGG 12660 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || || |||| | |||| | |||||||| | ||||| ||||| | ||||||| Sbjct 12659 TACTAATGGGACTTCTAATGGATTGATTCCAATGATTAGAGTTTTCAATAATACTGCAAG 12600 Query 110723 ATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| |||||||||| ||| ||| ||| | |||||| | ||| | ||||| || Sbjct 12599 ATATGTTGATCAAGGTGGTAATAAAAGACCTGGTGCTTTTGCTCTTTATTTAGAACCATG 12540 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| ||||| ||||| || | || |||| |||||||| || |||||| || Sbjct 12539 GCATAGTGATATTTTTGATTTTATTGATATTCGGAAAAATCATGGTAAAGAAGAAATTAG 12480 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 |||| | ||||| ||| |||| | ||| || |||||||||| ||| || ||| |||| Sbjct 12479 AGCAAGAGATTTGTTTCCTGCATTATGGGTTCCAGATTTATTTATGCAAAAAGTTAAAGA 12420 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 |||| ||| | | | | ||| | |||| ||| || |||||| ||||| Sbjct 12419 AAATTCAGATTGGACATTGTTTTCTCCAAGTGAAGCTCCAGGTTTAAGTGATGTTTATGG 12360 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAAT 111019 ||| |||||| | | ||| | | ||||| |||||| | | | ||| || Sbjct 12359 TGCAGATTTTGAAAAATTGTACAATAGATATGTTTCAGAAGGAAGAGGTAGAAAAACTAT 12300 Query 111020 TCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079 | ||| ||| || | |||| ||| | ||| ||||| |||||| || || || | Sbjct 12299 TAAAGCACAAAAATTATGGTATGCTATCTTGGAAGCACAAACTGAAACAGGTACACCATT 12240 Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 |||| | || |||||| | ||| ||||||||||||| ||||||||||| || || Sbjct 12239 TATTGTTTACAAAGATGCTTGTAACAAAAAATCTAATCAAAAAAATTTAGGAACTATCAA 12180 Query 111140 GTCTAGTAATTTGTGCTGTG 111159 || ||||||||| |||| Sbjct 12179 ATCATCTAATTTGTGTTGTG 12160 >seq140 Length=127049 Score = 163 bits (180), Expect = 7e-35 Identities = 465/705 (66%), Gaps = 21/705 (3%) Strand=Plus/Minus Query 131489 TTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACC 131548 || ||||||| ||||| |||||| | |||||||||| | || ||| | || || Sbjct 7065 TTTTGGACTGCAGAAGAAATCGATCTTTCCAAAGATATCCACGACTGGAATAATAGAA-- 7008 Query 131549 TTGAATGAAAA----AGATTTTG--TTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGAT 131602 |||||||||| ||||||| || | |||| | ||||| ||||| | ||| Sbjct 7007 -TGAATGAAAATGAAAGATTTTTCATTAGTAGAGTTTTAGCATTTTTCGCTGCTTCAGAT 6949 Query 131603 GGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTA 131662 || ||||| | ||| ||| | || ||||||| | ||| | | ||||| |||| Sbjct 6948 GGGATTGTCAATGAGAATTTGGTGGAGAATTTCAGTGCTGAAGTGCAGATTCCAGAAGCT 6889 Query 131663 ACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTA 131722 | || || ||| || ||| | | ||| ||| ||||| || | ||||| | Sbjct 6888 AAATGTTTTTACGGGTTCCAAATCATGATGGAAAATATCCATAGTGAAACATATTCGCTT 6829 Query 131723 TTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTG---ATGCTGTA 131779 ||||| || | | | | ||| || | | || || | |||| || ||||| | Sbjct 6828 TTGATCGATACTTATATCAAAGATCCAAAAGA---AAGTGAATTCTTGTTCAATGCTATT 6772 Query 131780 AATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGAT 131839 | | |||| ||| ||| | ||||| ||||||||||||| ||||||||||||||| Sbjct 6771 GAAACTATTCCACAAATCAAAGAAAAAGCTGAATGGGCTATTAGATGGATTCAAGATGAA 6712 Query 131840 TCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCA 131899 || ||| || |||| | || || |||||| |||||||||| | |||||||| Sbjct 6711 GATGCATTATTTGCTGAAAGATTGGTGGCATTTGCTGCTGTTGAAGGTGTTTTCTTTTCC 6652 Query 131900 GGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTG 131959 ||| | || ||| || |||||| | ||||| || |||||||| || | | || Sbjct 6651 GGTTCATTTGCTGCAATTTTTTGGTTAAAGAAAAAGGGGTTGATGCCAGGTTTGACTTTT 6592 Query 131960 TCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATAT-TAATCTA 132018 || ||| |||| || | |||||||||| | || ||||| ||||| || | || | | Sbjct 6591 TCAAATGAATTGATTTGTAGAGATGAAGGGCTACACACTGATTTTGC-ATGTCTATTATT 6533 Query 132019 TAGAAAATTTGCTGATAAACTTGATGAAAATAAT--ATTAAACAACTTATAAGCGAAGCA 132076 | | | || | |||||| ||| ||| ||| | ||| || |||| | ||||| Sbjct 6532 TCAACATTTGGAAAATAAACCAGATCCAAA-AATCGCTGAAAGAA-TTATTACTGAAGCT 6475 Query 132077 GTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAAT 132136 ||| ||| || || | | || ||| || |||||| ||| | || |||||| Sbjct 6474 GTTTCTATTGAAAAAAGATATTTTGAAGATGCATTGCCTGTTTCTTTATTAGGTATGAAT 6415 Query 132137 GCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTA 132181 |||| | ||||| | || ||||||| ||||||||| | ||| Sbjct 6414 GCTGCATTGATGAATCAATATGTTGAATTTGTTGCTGATAGATTA 6370 >seq101 Length=71874 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| | ||||||||||| || || ||||| || ||||| || |||| |||||| Sbjct 54917 AGACATATTGTTGACAATGATTTTGTGCTTTTCAACAGACAACCTTCTTTGCACAAAATG 54858 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||||||||| |||| | ||| ||||| | | | || ||| |||| ||| || | Sbjct 54857 TCTATGATGTCTCACAGAGTTAAAGTCATGCCATATTCTACGTTTAGATTGAATTTATCT 54798 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || |||||||| ||||||||||| |||||||||||| | || || |||||| Sbjct 54797 GTTACCTCTCCGTATAATGCAGATTTTGATGGGGATGAAATGAATTTACACGTTCCTCAA 54738 >seq166 Length=198011 Score = 91.5 bits (100), Expect = 3e-13 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| ||||| || ||||| || | || | | | ||||| || | ||| | | ||| Sbjct 65077 GTTCTTTTCAACAGACAACCGTCTTTACACAGACTATCTATTTTGTCCCATTATGCAAAA 65018 Query 305390 GTATTATCT-GGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 || | || ||| || |||| |||| || | | ||| |||||| || |||||||| | Sbjct 65017 GTCAGACCTTGGA--GAACTTTCAGATTGAACGAATGTGTTTGTACACCATATAATGCAG 64960 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||||| |||||||||||| ||||||| || ||| Sbjct 64959 ATTTTGATGGTGATGAAATGAATTTGCATGTGCCACAA 64922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186808162158105