Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06]
305 sequences; 11,383,302 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq70 113 3e-20
seq182 98.7 7e-16
seq230 89.7 4e-13
>seq70
Length=20209
Score = 113 bits (124), Expect = 3e-20
Identities = 172/242 (71%), Gaps = 5/242 (2%)
Strand=Plus/Minus
Query 27777 ACACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGA 27836
|||||||| ||||||||||||||||| |||||| | ||||||||| || || | ||
Sbjct 19816 ACACAATAA-AAAATGCAAATTTTTGTTAAAACTTTGACTGGGAAAACCATCACTTTGGA 19758
Query 27837 TGTCGAAAGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGT 27894
|| ||| | | ||| || |||| ||||| || || |||||||||||
Sbjct 19757 AGTTGAATCCTCAGACACCATCGACAAC--GTCAAGTCCAAGATCCAGGACAAAGAAGGG 19700
Query 27895 GTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGC 27954
|||| || || ||| | || |||||||| || ||||| ||||| |||| | |
Sbjct 19699 ATTCCACCTGACCAACAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACG 19640
Query 27955 TTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGC 28014
|||||||| |||||||||||||| ||| || | || ||||||||| | ||| | ||
Sbjct 19639 TTGTCCGACTACAACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGT 19580
Query 28015 GG 28016
||
Sbjct 19579 GG 19578
>seq182
Length=55006
Score = 98.7 bits (108), Expect = 7e-16
Identities = 162/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||||||||| || |||||| | || || ||| ||||| | || |||||| |
Sbjct 1663 AAGATGCAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTCGAATCC 1722
Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| ||| || ||||| || ||| ||||| |||||||||||| | || |
Sbjct 1723 TCTGACACCATTGACAAT--GTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTG 1780
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||| | || || ||||| || ||||||||||| || | | | ||||| || |
Sbjct 1781 ACCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACT 1840
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| |||||||| ||| | || ||||||||| | ||| | || ||
Sbjct 1841 ACAACATTCAAAAAGAATCCACCCTTCACTTGGTTTTGAGATTGAGAGGTGG 1892
>seq230
Length=21327
Score = 89.7 bits (98), Expect = 4e-13
Identities = 154/224 (69%), Gaps = 10/224 (4%)
Strand=Plus/Plus
Query 27798 TTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACCGACGATGT 27857
|||||| ||||| | ||||| || ||| || | || |||||| | |||||
Sbjct 13447 TTTTGTCAAAACCTTAACTGGTAAGACTATCACTCTAGAAGTCGAATCCTCCGAC----- 13501
Query 27858 ACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAA 27912
|| |||| |||||| ||||| |||||||||||| |||| || || |||
Sbjct 13502 ACCATCGATAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAA 13561
Query 27913 CGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATC 27972
| || || ||||| || ||||||||||| || | | | ||||| || ||||||||
Sbjct 13562 AGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATT 13621
Query 27973 CAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| |||| | || ||||| ||| | ||| | || ||
Sbjct 13622 CAAAAAGAATCCACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 13665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355861077192735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |