Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq70 113 3e-20 seq182 98.7 7e-16 seq230 89.7 4e-13 >seq70 Length=20209 Score = 113 bits (124), Expect = 3e-20 Identities = 172/242 (71%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 27777 ACACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGA 27836 |||||||| ||||||||||||||||| |||||| | ||||||||| || || | || Sbjct 19816 ACACAATAA-AAAATGCAAATTTTTGTTAAAACTTTGACTGGGAAAACCATCACTTTGGA 19758 Query 27837 TGTCGAAAGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGT 27894 || ||| | | ||| || |||| ||||| || || ||||||||||| Sbjct 19757 AGTTGAATCCTCAGACACCATCGACAAC--GTCAAGTCCAAGATCCAGGACAAAGAAGGG 19700 Query 27895 GTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGC 27954 |||| || || ||| | || |||||||| || ||||| ||||| |||| | | Sbjct 19699 ATTCCACCTGACCAACAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACG 19640 Query 27955 TTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGC 28014 |||||||| |||||||||||||| ||| || | || ||||||||| | ||| | || Sbjct 19639 TTGTCCGACTACAACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGT 19580 Query 28015 GG 28016 || Sbjct 19579 GG 19578 >seq182 Length=55006 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || |||||| | || || ||| ||||| | || |||||| | Sbjct 1663 AAGATGCAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTCGAATCC 1722 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || ||||| || ||| ||||| |||||||||||| | || | Sbjct 1723 TCTGACACCATTGACAAT--GTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTG 1780 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || ||||| || ||||||||||| || | | | ||||| || | Sbjct 1781 ACCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACT 1840 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||||| ||| | || ||||||||| | ||| | || || Sbjct 1841 ACAACATTCAAAAAGAATCCACCCTTCACTTGGTTTTGAGATTGAGAGGTGG 1892 >seq230 Length=21327 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 27798 TTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACCGACGATGT 27857 |||||| ||||| | ||||| || ||| || | || |||||| | ||||| Sbjct 13447 TTTTGTCAAAACCTTAACTGGTAAGACTATCACTCTAGAAGTCGAATCCTCCGAC----- 13501 Query 27858 ACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAA 27912 || |||| |||||| ||||| |||||||||||| |||| || || ||| Sbjct 13502 ACCATCGATAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAA 13561 Query 27913 CGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATC 27972 | || || ||||| || ||||||||||| || | | | ||||| || |||||||| Sbjct 13562 AGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATT 13621 Query 27973 CAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||| | || ||||| ||| | ||| | || || Sbjct 13622 CAAAAAGAATCCACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 13665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861077192735