Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq230 168 2e-36 seq182 165 2e-35 seq70 165 2e-35 seq292 86.0 1e-11 >seq230 Length=21327 Score = 168 bits (186), Expect = 2e-36 Identities = 160/202 (79%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| ||||||||||||||||| | ||||| || | ||||||||| || Sbjct 13654 TCTCAAGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 13595 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| ||||| | || ||||||||| || ||||||||||| || Sbjct 13594 ATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTT 13535 Query 225618 GTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||||||| ||| |||| | | ||||||||||| |||| ||| || |||| |||| Sbjct 13534 GTCTTGGAT-TTTGGCTTTGACGTTATCGATGGTGTCGGAGGATTCGACTTCTAGAGTGA 13476 Query 225677 TCGTCTTGCCCGTCAAAGTTTT 225698 | ||||| || || || ||||| Sbjct 13475 TAGTCTTACCAGTTAAGGTTTT 13454 >seq182 Length=55006 Score = 165 bits (182), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| || |||||||||||||| | ||||| || | ||||||||| || Sbjct 1881 TCTCAAAACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 1822 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| ||||| | || ||||||||| || || |||||||| || Sbjct 1821 ATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTT 1762 Query 225618 GTCTTGGATCTTTTGCTTCA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||||||| ||| |||| | || || |||||||| |||| ||| || || || || | Sbjct 1761 GTCTTGGAT-TTTGGCTTTAACATTGTCAATGGTGTCAGAGGATTCGACTTCCAAGGTAA 1703 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | || || || ||||||||||| | ||| | |||||| || Sbjct 1702 TGGTTTTACCTGTCAAAGTTTTAACGAAAATTTGCATCTT 1663 >seq70 Length=20209 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | |||||| || || || ||||||| ||||| |||| ||| ||||| || Sbjct 19589 TCTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAACGTTCTGCC 19648 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||| || ||||| || || | || ||||||||| || ||||| ||||| || Sbjct 19649 GTCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGGAATCCCTTCTTT 19708 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| || |||||||||||||||| ||| || || || ||||| Sbjct 19709 GTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGAGGATTCAACTTCCAAAGTGAT 19768 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || ||||||||||| | || | ||||||||| Sbjct 19769 GGTTTTCCCAGTCAAAGTTTTAACAAAAATTTGCATTTT 19807 >seq292 Length=12203 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||| |||||||||||||||||||| | | ||||| || || |||| Sbjct 4665 TTCTGGATGACCAAAGAATCAGAATAAATGTTGATATAATACTGGATCACCACCACCTGC 4724 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | ||||| || ||||||||| |||||||| |||| |||| Sbjct 4725 TACTTCAAAGAATGAAGTATTAAAGTTTCTATCCATTAATAACA 4768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526539811670