Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F000585475.2_202014-05-06] 305 sequences; 11,383,302 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq182 152 1e-31 seq70 152 1e-31 seq230 134 3e-26 seq146 125 2e-23 >seq182 Length=55006 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | ||||| ||||| || ||| | || || ||| ||| ||| Sbjct 1669 CAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTCGAATCCTCTGAC 1728 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || || || ||||||||||| ||||| || ||||| ||| Sbjct 1729 ACCATTGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGACCAACAA 1788 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | |||||||| || ||| | | || || ||| | Sbjct 1789 AGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATT 1848 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || || | ||||||||| | ||| Sbjct 1849 CAAAAAGAATCCACCCTTCACTTGGTTTTGAGATTGAGA 1887 >seq70 Length=20209 Score = 152 bits (168), Expect = 1e-31 Identities = 171/228 (75%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| ||||||| || |||||| | || || ||||| ||||| | || || ||| Sbjct 19807 AAAATGC---AAATTTTTGTTAAAACTTTGACTGGGAAAACCATCACTTTGGAAGTTGAA 19751 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||||||||||||| |||||||| ||||| |||||||||||||| || || || Sbjct 19750 TCCTCAGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAAGGGATTCCACCT 19691 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| ||| || | || || || || |||||| | ||||| || || || | |||| Sbjct 19690 GACCAACAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACGTTGTCCGAC 19631 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||| ||||||| || || || || || | ||||||||| | ||| Sbjct 19630 TACAACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGA 19583 >seq230 Length=21327 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||| || ||||| | || || || || ||||| || || || ||| ||| |||||||| Sbjct 13447 TTTTGTCAAAACCTTAACTGGTAAGACTATCACTCTAGAAGTCGAATCCTCCGACACCAT 13506 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| ||||||||| || || || ||||||||||| || || || ||||| ||| || | Sbjct 13507 CGATAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAAAGATT 13566 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || ||||| | |||||||| || ||| | | || || ||| | ||||| Sbjct 13567 GATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAA 13626 Query 178109 AGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || || || | || |||||| | ||| Sbjct 13627 AGAATCCACTCTTCACTTGGTCTTGAGATTGAGA 13660 >seq146 Length=42798 Score = 125 bits (138), Expect = 2e-23 Identities = 208/292 (71%), Gaps = 14/292 (5%) Strand=Plus/Minus Query 254275 AGACATGTCGATGGCTTGG--GAAAGTCCCGGTTCTCCCCCATACGGAATGTCAAAAATC 254332 ||||| || ||||||||| |||| || ||| |||||||| | ||| |||| |||| Sbjct 9259 AGACAAATCAATGGCTTGGTTGAAA--CCGTTTTCACCCCCATAGGAAATATCAACAATC 9202 Query 254333 CCAAGAACTTTTGTTCGG-AGTCTTTGGTCGAAAAGGTCAGATT---CCAAAAGTTTTGT 254388 | || |||||| | | ||| | ||| || | ||||||| ||||| | || Sbjct 9201 TTCACAA-TTTTGTCAGCCAATCTGTTGTCAAACAAATCAGATTTAGCCAAA---TCGGT 9146 Query 254389 TTTGAACTCTGCCGCTCCCGCGATAACAATTCCGAGGACGTTGCATTTGTTGTCTTGT-A 254447 |||||| ||||| | ||||| | ||| | || ||| ||| ||||| || |||| | Sbjct 9145 TTTGAAATCTGCTGAACCCGCTAGAACTAACCCTTTGACATTGACTTTGTCGT-TTGTGA 9087 Query 254448 TGAAGCATTGGGTTGCGTTCTCTGCGACTTTTCTCAAATAGTTGTGTCTTTTTTCTTTTC 254507 |||| |||| ||| || ||||||||||||| |||||||||||||||||||| || Sbjct 9086 TGAAATTTTGGACAGCGACTTCAGCGACTTTTCTCACATAGTTGTGTCTTTTTTCTTCTC 9027 Query 254508 GAAGTCTTTCGAACCGGAGGGCTGACTGTCCTCCTCGACCGTGTTTCTTTGG 254559 | | | || || ||||| || || || |||| ||||||||||||||| Sbjct 9026 TCAAACGAGCAAAACGAAGGGCGGATTGACCACCTCTACCGTGTTTCTTTGG 8975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726496044170