Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq627 141 8e-29 seq506 114 1e-20 seq631 113 4e-20 seq596 95.1 1e-14 >seq627 Length=179744 Score = 141 bits (156), Expect = 8e-29 Identities = 394/598 (66%), Gaps = 11/598 (2%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 |||||||| ||||||| || |||| | || || ||| | |||||| || ||| Sbjct 172654 AGATTTGTTTTGTTTCCAATCAAATACCATGAAATCTGGCAAGCTTACAAACGTGCTGAA 172713 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 || || |||||||| | |||||| | || || || || ||| | ||| ||| || Sbjct 172714 GCTTCATTTTGGACTGCAGAAGAAATCGATCTTTCCAAAGATATCCACGACTGGAATAAT 172773 Query 57657 C---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 | || ||| ||| ||| ||| |||| || || || |||||||| || || Sbjct 172774 AGAATGAATGAAAATGAAAGATTTTTCATTAGTAGAGTTTTAGCATTTTTCGCTGCTTCA 172833 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAAGTGACGG 57771 ||||| ||||| || ||||||||||| | ||| ||||| |||||||| | | | Sbjct 172834 GATGGGATTGTCAATGAGAATTTGGTGG--AGAATTTCAGTGCTGAAGTGCAGATTCCAG 172891 Query 57772 AGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATT 57831 | || | ||| |||||||| || ||| | || ||||| | ||| |||| |||| Sbjct 172892 AAGCTAAATGTTTTTACGGGTTCCAAATCATGATGGAAAATATCCATAGTGAAACATATT 172951 Query 57832 CGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAA-CGTAGAC-TGTTCAACGC 57889 |||| | |||||||| || | || | | | | ||||| | | | ||||||| || Sbjct 172952 CGCTTTTGATCGATACTTATATCAA--AGATCCAAAAGAAAGTGAATTCTTGTTCAATGC 173009 Query 57890 GATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAG 57949 || ||||| || || ||| | || || || ||| | || | |||||| || Sbjct 173010 TATTGAAACTATTCCACAAATCAAAGAAAAAGCTGAATGGGCTATTAGATGGATTCAAGA 173069 Query 57950 CGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 | || || || || || | | || || || || || |||||| | ||||| Sbjct 173070 TGAAGATGCATTATTTGCTGAAAGATTGGTGGCATTTGCTGCTGTTGAAGGTGTTTTCTT 173129 Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 ||| || ||||| ||||| |||||| | |||||| || ||||||| || |||| Sbjct 173130 TTCCGGTTCATTTGCTGCAATTTTTTGGTTAAAGAAAAAGGGGTTGATGCCAGGTTTGAC 173189 Query 58070 GTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 ||| || || ||||| | | || || || || || ||||||||||| || ||| Sbjct 173190 TTTTTCAAATGAATTGATTTGTAGAGATGAAGGGCTACACACTGATTTTGCATGTCTA 173247 >seq506 Length=5049 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || ||| ||||||| ||||| || ||| | || || ||| | Sbjct 1671 AAGATGCAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTCGAATCC 1730 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || | || ||| | ||| ||||| ||||| | || || ||| Sbjct 1731 TCTGACACCATTGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGAC 1790 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| ||||| |||||||| || ||| || || || Sbjct 1791 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 1850 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||||||||||| || ||||| |||| | ||| |||| || ||| Sbjct 1851 AACATTCAAAAAGAATCCACCCTTCACTTGGTTTTGAGATTGAGAGGTGGT 1901 >seq631 Length=151218 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 ||| ||| ||||||||||| || || ||| |||| || ||||| |||||| | || |||| Sbjct 131169 AATAAAAAATGCAAATTTTTGTTAAAACTTTGACTGGGAAAACCATCACCTTGGAAGTTG 131228 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 || | || |||| |||| | ||||| | || |||||| ||||| | || | Sbjct 131229 AATCCTCAGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAAGGGATTCCAC 131288 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | ||||| || | | || || ||||| ||||||||||||||| | || || || Sbjct 131289 CTGACCAACAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACGTTGTCCG 131348 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || ||||| ||||| || ||||| || || |||| | ||| |||| || || Sbjct 131349 ACTACAACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGTGG 131403 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| || ||||| ||||| | || |||||| | || Sbjct 131405 ATGCAAATCTTTGTGAAGACTTTGACTGGGAAAACCATCACTTTGGAAGTTGAATCCTCA 131464 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||| ||||| | || || ||||| Sbjct 131465 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAAGGGATTCCACCTGACCAA 131524 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||||||||||||| | || || ||| || ||| Sbjct 131525 CAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACATTGTCCGACTACAAC 131584 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||| || ||||| || || |||| | ||| |||| || ||| Sbjct 131585 ATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGTGGT 131632 >seq596 Length=25494 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || || || | || || || || ||||| | || || ||| | ||||||| | Sbjct 12142 TTTTGTCAAAACCTTAACTGGTAAGACTATCACTCTAGAAGTCGAATCCTCCGACACCAT 12083 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | |||||| | ||| ||||| ||||| | || || ||||| || | | Sbjct 12082 CGATAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAAAGATT 12023 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || || ||||| ||||| |||||||| || ||| || || || ||||||||||| Sbjct 12022 GATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAA 11963 Query 31381 AGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| |||||||| |||| | ||| |||| || ||| Sbjct 11962 AGAATCCACTCTTCACTTGGTCTTGAGATTGAGAGGTGGT 11923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762271088720