Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq627 242 9e-59 seq596 150 4e-31 seq631 113 1e-19 >seq627 Length=179744 Score = 242 bits (268), Expect = 9e-59 Identities = 625/933 (67%), Gaps = 27/933 (3%) Strand=Plus/Plus Query 268673 GAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGAT 268732 |||||||| || || | ||| | |||||||| | |||||||| | | ||| Sbjct 172627 GAACCGCTATTGGTGGAAAACAAAAGAAGATTTGTTTTGTTTCCAATCAAATACCATGAA 172686 Query 268733 ATATGG-AGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCT 268791 || ||| | | | ||||||| || | ||||| |||||||||| ||||||| | ||||| Sbjct 172687 ATCTGGCAAGCT-TACAAACGTGCTGAAGCTTCATTTTGGACTGCAGAAGAAATCGATCT 172745 Query 268792 GTCTTATGACTTAATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATC 268848 || | || | || ||||| ||| || || | || |||||| || || | Sbjct 172746 TTCCAAAGATATCCACGACTGGAATAATAGAATGAATGAAAATGAAAGATTTTTCAT-TA 172804 Query 268849 TTATATTCTT-GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGA 268907 || | | || || ||||| || | | ||||| || || || || ||| | || |||| Sbjct 172805 GTAGAGTTTTAGCATTTTTCGCTGCTTCAGATGGGATTGTCAATGAGAATTTGGTGGAGA 172864 Query 268908 AGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTA 268967 | ||| || || || |||||||| ||||| | |||||||||||| ||||| || | Sbjct 172865 ATTTCAGTGCTGAAGTGCAGATTCCAGAAGCTAAATGTTTTTACGGGTTCCAAATCATGA 172924 Query 268968 TAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACA 269027 | |||||||| ||| || | || || || || ||||||||||| | ||| | Sbjct 172925 TGGAAAATATCCATAGTGAAACATATTCGCTTTTGATCGATACTTATATCAAAGATCCAA 172984 Query 269028 ACGAAAAGAAAAGACTATTTTC--TTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTC 269085 | |||| | || || | ||| | |||| |||||| | | | ||||| | Sbjct 172985 AAGAAA-GTGAATTCT-TGTTCAATGCTATTGAAACTATTCCACAAATCAAAGAAAAAGC 173042 Query 269086 TGAATGGGCTCTGAAATGGATAAACGAT-AGCGCGCCTTA--CGGAGAAAGGTTAGTTGC 269142 |||||||||| | | |||||| | ||| | || ||| | ||||| || || || Sbjct 173043 TGAATGGGCTATTAGATGGATTCAAGATGAAGATGCATTATTTGCTGAAAGATTGGTGGC 173102 Query 269143 TTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAA 269202 ||||| ||||| |||||| | |||||||| || || ||||| || || |||||||| || Sbjct 173103 ATTTGCTGCTGTTGAAGGTGTTTTCTTTTCCGGTTCATTTGCTGCAATTTTTTGGTTAAA 173162 Query 269203 GAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG 269262 ||||| || | |||||||| || ||||| || || |||||||| | || || ||||| Sbjct 173163 GAAAAAGGGGTTGATGCCAGGTTTGACTTTTTCAAATGAATTGATTTGTAGAGATGAAGG 173222 Query 269263 TTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCA 269322 ||||| || || || ||| ||||||| | | || | | | ||||| || Sbjct 173223 GCTACACACTGATTTTGCATGTCTATTATT---TCAACATTTGGAAAATAAACCAGATCC 173279 Query 269323 AGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAG-AAACAGA-ATTTCTAACG 269380 | | | | | |||||| | |||||||||| | | ||| ||| |||| || Sbjct 173280 AAAAATCGCTGAAAGAATTATTACTGAAGCTGTTTCTATTGAAAAAAGATATTTTGAA-- 173337 Query 269381 GAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAG 269440 || || | || | | | | ||||||||| || ||||| ||||| || | Sbjct 173338 GATGCATTGCCTGTTTCTTTATTAGGTATGAATGCTGCATTGATGAATCAATATGTTGAA 173397 Query 269441 TTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAA---TATAACGTTGAA 269497 || || |||||||||| |||| | ||||| || | ||||| ||||| ||| | Sbjct 173398 TTTGTTGCTGATAGATTATTGGTTGCATTAGG---TAATGAAAAATATTATAATGTTTCA 173454 Query 269498 AATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAG 269557 ||||| ||| ||||||||| ||||| ||||||| |||||| | |||||||| || || Sbjct 173455 AATCCATTTGATTTTATGGAAAATATTTCATTAGCAGGTAAAACCAATTTCTTTGAAAAA 173514 Query 269558 CGGGTAAGTAACTATCAGAAAATGGGTGTAATG 269590 | || | | ||||| ||| ||||| ||| Sbjct 173515 AGAGTTTCTGATTATCAAAAAGCAGGTGTTATG 173547 >seq596 Length=25494 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| ||||| || |||||||| | ||||||||| ||||| | |||||| ||| Sbjct 11954 GTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCA 12013 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||||| ||||| || || |||||||| || || || || ||||| Sbjct 12014 GCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGGATTTTGGCTTTG 12073 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | ||| || ||||| || |||||||||||||| | ||| Sbjct 12074 ACGTTATCGATGGTGTCGGAGGATTCGACTTCTAGAGTGATAGTCTTACCAGTTAAGGTT 12133 Query 104543 TTTACAAA 104550 || ||||| Sbjct 12134 TTGACAAA 12141 >seq631 Length=151218 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || | ||||| |||||||| | ||||| ||| Sbjct 131373 GTCGACTCCTTTTGGATGTTGTAGTCGGACAACGTTCTGCCGTCTTCCAACTGTTTACCA 131314 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || ||||| ||||| || || |||||||| ||||| ||||| | || Sbjct 131313 GCAAAAATCAATCTTTGTTGGTCAGGTGGAATCCCTTCTTTGTCCTGGATCTTGGACTTG 131254 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | ||| || || | || || || || ||||| | ||| Sbjct 131253 ACGTTGTCGATGGTGTCTGAGGATTCAACTTCCAAGGTGATGGTTTTCCCAGTCAAAGTT 131194 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| || |||||||| Sbjct 131193 TTAACAAAAATTTGCATTTT 131174 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || | ||||| |||||||| | ||||| ||| Sbjct 131601 GTCGACTCCTTTTGGATGTTGTAGTCGGACAATGTTCTGCCGTCTTCCAACTGTTTACCA 131542 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || ||||| ||||| || || |||||||| ||||| ||||| | || Sbjct 131541 GCAAAAATCAATCTTTGTTGGTCAGGTGGAATCCCTTCTTTGTCCTGGATCTTGGACTTG 131482 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | ||| || || | || || || || ||||| | || Sbjct 131481 ACGTTGTCGATGGTGTCTGAGGATTCAACTTCCAAAGTGATGGTTTTCCCAGTCAAAGTC 131422 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 131421 TTCACAAAGATTTGCAT 131405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151387468551628