Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq602 125 9e-24 seq671 109 7e-19 seq580 93.3 5e-14 >seq602 Length=60854 Score = 125 bits (138), Expect = 9e-24 Identities = 257/378 (68%), Gaps = 18/378 (5%) Strand=Plus/Minus Query 164604 TAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGT 164663 |||||||||||||||||||||| | |||| ||||| || ||| || || | ||| | Sbjct 13061 TAAAATTGTTAATGGTCCTGAAATTTTGAGTAAATACGTGGGTTCCTCTGAGGAAAATAT 13002 Query 164664 TAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAA---GAAAGCAGGTTTAGCTAGTAA 164720 |||||| |||||| |||| || || | |||| | || ||||| || || ||| Sbjct 13001 TAGAAATTTGTTTAAGGACGCAGAGGCAGAATACAAAGCGAAAGGAGA---AGAAAGTTC 12945 Query 164721 ATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAA--AAA-------ACGTGG 164771 || ||| |||| |||||||||| | || || | | ||| ||| | | || Sbjct 12944 CTTGCATATTATCATTTTTGATGAATTGGACTCTGTCTTCAAGCAAAGAGGGTCAAGAGG 12885 Query 164772 TGATAATATTATTCATGATG-CAGTG--GTTAATCAGTTGCTTTCTAAAATAGATGGTGT 164828 |||| || || || || || || ||||| ||| | | ||||| |||||||| Sbjct 12884 TGATGGTACAGGGGTTGGTGACAATGTTGTCAATCAATTGTTAGCCAAAATGGATGGTGT 12825 Query 164829 AGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGA 164888 || ||||| || ||||| || | ||||||||||| || ||||| || ||| | Sbjct 12824 TGATCAGTTAAACAACATTTTGGTTATTGGTATGACCAATCGTAGAGATTTGATCGATAA 12765 Query 164889 TGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGA 164948 || ||||| |||||||| |||| ||| | || | ||||| || || || |||| Sbjct 12764 CGCGTTATTGAGACCTGGTAGATTTGAAGTTCAAGTGGAAATCAAGTTGCCAGATGAAGA 12705 Query 164949 AGGACGCCTTCAAATTTT 164966 ||| | || |||||||| Sbjct 12704 AGGTAGACTACAAATTTT 12687 >seq671 Length=59753 Score = 109 bits (120), Expect = 7e-19 Identities = 297/449 (66%), Gaps = 23/449 (5%) Strand=Plus/Plus Query 6807 TAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATG 6866 || ||||||||| | ||| | | |||||| ||||| ||||| || || | || || Sbjct 42773 TATTTGTTCTTTCAAAGCGTCAACGTGATCTTTATAAACGTGAGCGTCCCCCAAAGTGTG 42832 Query 6867 AATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATA 6926 ||||||||||| || | ||||||| | ||| ||||| | | || || |||||||| Sbjct 42833 GATAAATTCACCAGGATCCATATCACAAACTTTGGCAATCATCTTGGTCAACAATGCATA 42892 Query 6927 AGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATA-ACATTG-A 6984 || || | || || || || ||||| ||||| || |||||||| || | | | | Sbjct 42893 GGATGCGATGTTGAATGGAACTCCTAAACCCATGTCGCAGGATCTTTGGTATAGAACGCA 42952 Query 6985 C--AAGATAA--AATATTGTCTA------TAG---------CATAAAATTGACACAATAC 7025 | ||| | | | | | || ||| |||||||||||| || || Sbjct 42953 CGAAAGTTTAGGACGAGCGCCTTCCTCCTTAGGAAAACTCACATAAAATTGACTGAAGAC 43012 Query 7026 ATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAAT 7085 |||||| || || ||| | | | | ||| | |||||||||||| | | | ||| Sbjct 43013 ATGACAAGGTGGCAAAGCCATTTTTTTGAAATCTGGAGGATTCCAAGCACTTAAGATAAT 43072 Query 7086 ACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAA-TTGATCTATAC 7144 | ||| || | || || ||| | ||| ||| | | | | || |||||| | Sbjct 43073 TCTTCTGTCGTAAGGGTTATGTTTCAGTTTATATATGACT-TCAGCAAGTTGATCGTAGC 43131 Query 7145 CCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAA 7204 |||| || ||||| || | ||| | | || | ||||||||||||||||| |||| Sbjct 43132 CCTGGCCATCATAGTTGTCGTCACATGTCTTGTATTCTGCTCCAAAATGTCTCCACTGAA 43191 Query 7205 ACCCATAAATAGGACCTAAATCACCTTCT 7233 ||||||||| |||||| | |||||||||| Sbjct 43192 ACCCATAAACAGGACCAAGATCACCTTCT 43220 >seq580 Length=59395 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 |||||| ||| | | ||| || | ||| | || |||| ||||| |||||||| || Sbjct 5892 GTTAAAGTTAGAGTTAGAACTACCAAAGTGCCGCAAATTGGTGACAAGTTTGCCTCCAGA 5951 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 | ||||||||| || |||||| | ||| | |||||||||||| ||||| | Sbjct 5952 CACGGTCAAAAAGGTACCATTGGTATCACATATAGAAGAGAAGATATGCCATTTACGGCA 6011 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| || || ||| | || || |||||||| ||| ||||| ||| ||||| Sbjct 6012 GAAGGTATTGTTCCTGATTTGATCATCAACCCACACGCTATTCCATCTCGTATGAC 6067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595866480735600