Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq627 224 3e-53 seq664 159 9e-34 seq671 91.5 4e-13 >seq627 Length=179744 Score = 224 bits (248), Expect = 3e-53 Identities = 539/805 (67%), Gaps = 24/805 (3%) Strand=Plus/Plus Query 22214 TTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTG 22273 || ||||||| || ||| | |||| || || || ||||||| | ||| ||||| Sbjct 172811 TTTTAGCATTTTTCGCTGCTTCAGATGGGATTGTCAATGAGAATTTGGTGGAGAATTTCA 172870 Query 22274 CATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAA 22333 ||||| | || ||||| || | |||||| || || | ||||| ||||| |||| Sbjct 172871 GTGCTGAAGTGCAGATTCCAGAAGCTAAATGTTTTTACGGGTTCCAAATCATGATGGAAA 172930 Query 22334 ATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAG--AAGATAAAGACGA 22391 || | || ||||||||||| | || | | ||| || ||||| | | || Sbjct 172931 ATATCCATAGTGAAACATATTCGCTTTTGATCGAT--ACTTATATCAAAGATCCAAAAGA 172988 Query 22392 ACAACGAAA-CTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATT 22450 | | ||| ||| ||| || ||| || |||| | ||| || | || || || | Sbjct 172989 A-AGTGAATTCTTGTTCAATGCTATTGAAACTATTCCACAAATCAAAGAAAAAGCTGAAT 173047 Query 22451 GGGCGCTGAAATGGATGAACAATGAACGTTCATTC---GCGGAACGTCTTATTGCATTTG 22507 |||| | | |||||| | ||||| | |||| || ||| | | | ||||||| Sbjct 173048 GGGCTATTAGATGGATTCAAGATGAAGATGCATTATTTGCTGAAAGATTGGTGGCATTTG 173107 Query 22508 CTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaC 22567 ||| |||||||| |||||||||| || ||||| |||||| |||||| |||| ||| Sbjct 173108 CTGCTGTTGAAGGTGTTTTCTTTTCCGGTTCATTTGCTGCAATTTTTTGGTTAAAGAAAA 173167 Query 22568 GTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTC 22627 | | ||||| ||| | || ||||||||||| || ||| | ||||||| || || | Sbjct 173168 AGGGGTTGATGCCAGGTTTGACTTTTTCAAATGAATTGATTTGTAGAGATGAAGGGCTAC 173227 Query 22628 ATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACT---TCCATATG 22684 | || |||||||| ||| | ||| || | ||| | |||||| |||| | Sbjct 173228 ACACTGATTTTGCATGTCTATTATTTC---AACATTTGGAAAATAAACCAGATCCAAAAA 173284 Query 22685 AAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGG 22744 ||| | || |||||||| | || ||| ||||| || | || || | Sbjct 173285 TCGCTGAAA--GA-ATTATTACTGAAGCTGTTTCTATTGAAAAAAGATATTTTGAAGATG 173341 Query 22745 CGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTG 22804 | || || || | | | ||||| ||||| | || |||| | |||| || |||||| Sbjct 173342 CATTGCCTGTTTCTTTATTAGGTATGAATGCTGCATTGATGAATCAATATGTTGAATTTG 173401 Query 22805 TTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCAT 22864 |||| ||| | |||| || || | ||| ||| ||| ||||||| || ||||||| Sbjct 173402 TTGCTGATAGATTATTGGTTGCATTAGGTAATGAAAAATATTATAATGTTTCAAATCCAT 173461 Query 22865 TTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTG 22924 |||| | |||||| ||||||| | | ||| || ||||||||||| |||||||||||| Sbjct 173462 TTGATTTTATGGAAAATATTTCATTAGCAGGTAAAACCAATTTCTTTGAAAAAAGAGTTT 173521 Query 22925 GTGAATACCAAAAAGCAGGTGTTATGG---ATGCATTGAAT---GATAGTTCAAAACACG 22978 ||| || ||||||||||||||||||| | || ||| || ||| || || | Sbjct 173522 CTGATTATCAAAAAGCAGGTGTTATGGCAAAATCAAGTAATACAGAAAGTGCAGAAGGTG 173581 Query 22979 GATTTACATTAGATGAAGAATTTTA 23003 ||||| || |||||||| ||||| Sbjct 173582 CTTTTACCTTTGATGAAGATTTTTA 173606 >seq664 Length=41649 Score = 159 bits (176), Expect = 9e-34 Identities = 543/836 (65%), Gaps = 14/836 (2%) Strand=Plus/Plus Query 363363 TTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCT 363422 |||||| | ||| || | ||| || ||| || | || || |||| | ||| || | Sbjct 33056 TTATGATAGAGATTTCCAATATAATTATTTTGGTTTCAAAACATTGGAAAGATCGTATTT 33115 Query 363423 ATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTAT 363482 || | |||||||| | |||| |||| | || || ||| || | ||| | |||||| | Sbjct 33116 ATTAAGAATCAATGGACAAATTGCTGAAAGACCTCAACATTTGATCATGAGAGTTGCTGT 33175 Query 363483 TGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCG 363542 || || ||| | | ||| |||| | | ||||| ||||| || | || | | Sbjct 33176 CGGGATTCATGGTTCAGATATTGAAAAAGTCTTGGAAACTTATAA--TTTGATGTCTTTG 33233 Query 363543 TG-TATT-CACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATG 363600 | |||| ||| || || | ||||| | | |||||||||||| | | || || ||| Sbjct 33234 AGATATTTCACACATGCATCTCCAACTTTATTCAATGCTGGAACACCAAGACCTCAAATG 33293 Query 363601 TCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTT 363660 ||||| || || ||| | ||||| ||||||||||| || ||||| | ||| || | Sbjct 33294 TCTTCATGTTTCCTTGTTGCTATGAAAGACGATTCCATTGATGGTATTTATGATACTTTA 33353 Query 363661 AAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTT 363720 || | |||||| | ||||| || | ||| || || |||||| | || || ||| || Sbjct 33354 AAAGAATGTGCTTTGATTTCTAAAACTGCTGGTGGTATTGGTCTTCATATTCATAATATT 33413 Query 363721 CGTGCA--CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCC 363777 | || | | | ||| ||| || || | |||| || ||||| || |||| Sbjct 33414 AGATCAACCGGTTC--TTATATTGCAGGTACTAATGGGA-CTTCTAATGGATTGATTCCA 33470 Query 363778 ATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCA 363835 ||| || | || || | |||||||| || || || || || ||||| | |||| | Sbjct 33471 ATGATTAGAGTTTTCAATAATACTGCAAGATATGTTGATCAAGGTGGTAATAAAAGACC- 33529 Query 363836 AAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGC 363895 || || |||||| | ||| | || || ||| ||||||||||| ||| |||| Sbjct 33530 -TGGTGCTTTTGCTCTTTATTTAGAACCATGGCATAGTGATATTTTTGATTTTATTGATA 33588 Query 363896 TCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGG 363955 | |||||||| || ||||| ||| | | ||| | ||| |||| |||| | |||| Sbjct 33589 TTCGGAAAAATCATGGTAAAGAAGAAATTAGAGCAAGAGATTTGTTTCCTGCATTATGGG 33648 Query 363956 TTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCAC 364015 || | || |||||| | || | | | | ||||| || | |||| ||| Sbjct 33649 TTCCAGATTTATTTATGCAAAAAGTTAAAGAAAATTCAGATTGGACATTGTTTTCTCCAA 33708 Query 364016 ACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGT 364075 ||| ||||||| | ||||| | |||| || | || | ||| | | | Sbjct 33709 GTGAAGCTCCAGGTTTAAGTGATGTTTATGGTGCAGATTTTGAAAAATTGTACAATAGAT 33768 Query 364076 ATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCA 364135 ||| || || |||| | | | || || ||| ||||| || |||||| ||| ||| Sbjct 33769 ATGTTTCAGAAGGAAGAGGTAGAAAAACTATTAAAGCACAAAAATTATGGTATGCTATCT 33828 Query 364136 TGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAAC 364191 |||| | || | ||| ||||| ||||| | ||| | ||||||||| | || ||| Sbjct 33829 TGGAAGCACAAACTGAAACAGGTACACCATTTATTGTTTACAAAGATGCTTGTAAC 33884 >seq671 Length=59753 Score = 91.5 bits (100), Expect = 4e-13 Identities = 203/293 (69%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 111425 AATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTT--GTCGACAAC 111482 ||||||||| |||||||| ||| | || | ||| || |||| ||| || |||| Sbjct 43280 AATTTGGGAAGGAAATGGGTCAAGAGAGTATCTTGACAAGCTTGG-CTTAAGT-GACAGA 43223 Query 111483 GAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTAC 111542 |||||||||||| || || ||||| || ||||| ||| | || ||||| ||||| ||| Sbjct 43222 AGAGAAGGTGATCTTGGTCCTGTTTATGGGTTTCAGTGGAGACATTTTGGAGCAGAATAC 43163 Query 111543 AAAACCATG-CACGACTCATATGATTCACAGGGAACTGATCAA-TTACAGAATGTCATTG 111600 || | |||| ||||| |||||| ||||| |||||| || | ||| ||||| Sbjct 43162 AAGA-CATGTGACGACAACTATGATGGCCAGGGCTACGATCAACTTGCTGAA-GTCATAT 43105 Query 111601 ATCAAATTAAGAACAACCC-AACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAAT 111659 || || | || | ||||| || | | | ||||| | ||||| ||||| || Sbjct 43104 ATAAACTGAAACATAACCCTTACGAC-AGAAGAATTATCTTAAGTGCTTGGAATCCTCCA 43046 Query 111660 GCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT 111712 | || |||||||||| | ||||| |||||| | | | || |||||||| Sbjct 43045 GATTTCAAAAAAATGGCTTTGCCACCTTGTCATGTCTTCAGTCAATTTTATGT 42993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341225879462