Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq664 434 1e-116 seq627 417 9e-112 >seq664 Length=41649 Score = 434 bits (480), Expect = 1e-116 Identities = 888/1312 (68%), Gaps = 37/1312 (3%) Strand=Plus/Minus Query 47880 GCTATAGATGCTAGATTACATACAGC---TACCTCATTTGGATTAGTATATTGTATTATT 47936 || ||||| || | |||||| ||||| | | || || || | ||||| | ||| Sbjct 33997 GCAATAGAAGCCAAATTACAAACAGCAGTTTCGTCGTT---ATCTGAATATTCCACAATT 33941 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| ||| | |||| |||||||||| || ||||||| |||||| |||||| Sbjct 33940 TCACAACACAAATTAGATGATTTGATAGTTCCTAAATTTTTTTGATTAGATTTTTTGTTA 33881 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 || || || ||||||| ||||| ||||| || ||||| | || | ||| | ||||| Sbjct 33880 CAAGCATCTTTGTAAACAATAAATGGTGTACCTGTTTCAGTTTGTGCTTCCAAGATAGCA 33821 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | | || || ||| |||| || | || | ||| || | Sbjct 33820 TACCATAATTTTTGTGCTTTAATAGTTTTTCTACCTCTTCCTTCTGAAACATATCTATTG 33761 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 || || || ||||| || | ||||| |||| | ||| || ||| |||| | ||| | Sbjct 33760 TACAATTTTTCAAAATCTGCACCATAAACATCACTTAAACCTGGAGCTTCACTTGGAGAA 33701 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | ||||| |||||| || | ||| ||| | |||||||| |||||| | ||| | Sbjct 33700 AACAATGTCCAATCTGAATTTTCTTTAACTTTTTGCATAAATAAATCTGGAACCCATAAT 33641 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| || | ||| | |||||| || ||| ||| | || |||| | Sbjct 33640 GCAGGAAACAAATCTCTTGCTCTAATTTCTTCTTTACCATGATTTTTCCGAATATCAATA 33581 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | |||||| |||||||||||||||||| | || | |||| |||| |||| Sbjct 33580 AAATCAAAAATATCACTATGCCATGGTTCTAAATAAAGAGCAAAAGCACCAGGTCTTTTA 33521 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA-CAAT 48415 ||||| |||||||| | |||||| |||||||| || ||||||| | |||||| | |||| Sbjct 33520 TTACCACCTTGATCAACATATCTTGCAGTATTATTGAAAACTCTAATCATTGGAATCAAT 33461 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 ||||| || | ||||| || || | ||||||| || | | ||| |||||| ||| Sbjct 33460 -CCATTAGAAGTCCCATTAGTACCTGCAATATAAGAACCGGTTGATCTAATATTATGAAT 33402 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 || ||| |||||||| || ||||||| || | |||||| ||| | |||||||| Sbjct 33401 ATGAAGACCAATACCACCAGCAGTTTTAGAAATCAAAGCACATTCTTTTAAAGTATCATA 33342 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 ||| || || || ||| ||| ||||| | || ||||| ||||||||| || Sbjct 33341 AATACCATCAATGGAATCGTCTTTCATAGCAACAAGGAAACATGAAGACATTTGAGGTCT 33282 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 ||||| | ||| ||||| |||||||||||||| | || || || || | ||| Sbjct 33281 TGGTGTTCCAGCATTGAATAAAGTTGGAGATGCATGTGTGAAATATCTCAAAGACATCAA 33222 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 ||||| ||||| | || || ||||| | ||| || || | || || | ||| Sbjct 33221 ATTATAAGTTTCCAAGACTTTTTCAATATCTGAACCATGAATCCCGACAGCAACTCTCAT 33162 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 | || || ||||||||||||| |||||| ||| ||| | || | ||| ||| |||| Sbjct 33161 GATCAAATGTTGAGGTCTTTCAGCAATTTGTCCATTGATTCTTAATAAATACGATCTTTC 33102 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTG----ATG 48831 ||||||||| ||||||||||| || ||| || || |||||| || ||| | || Sbjct 33101 CAATGTTTTGAAACCAAAATAATTATATTGGAAATCTCTATCATAAACAATAGCACTATT 33042 Query 48832 AA-------TTTATTCTTTCCT-TATGTTTATATACTACATC------CATTACATTTTT 48877 | |||||| ||| || | || ||| || |||| |||| | ||| Sbjct 33041 TAAAACATCTTTATTTTTTTCTACAATTTGATAAACGTCATCACTAATCATTGGAGATTT 32982 Query 48878 TGATATAATTGATTCCTT---GTAAAGATCT---TCT---ACAACATCACTAAATAtttt 48928 | || | || ||| || |||| || | ||| | || | | |||| ||| Sbjct 32981 TAATCCATTTTTTTCATTAACATAAAAATATAAATCTGAAATGACTTGAGAAAATTGTTT 32922 Query 48929 ttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGG 48988 ||| |||| |||||| | |||||| |||| ||||| ||||| ||| |||||||||| || Sbjct 32921 TTTAGTTTGTTTATGTAAATTAGAAATAGCAATTCTTGCAGCCAATGTAGCATAATCAGG 32862 Query 48989 ATGAATTGTTGTACATGT-ACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAG 49047 |||||| || || ||| | | | || |||| || || || |||| ||||| |||||| Sbjct 32861 ATGAATAGTGGT-CATATAAGCACATGTTTCAGCAGCCAAATTATCCAATTCAATAGTAG 32803 Query 49048 TTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTACTGGATCTATATGAT 49107 | |||||| ||| | || |||| | | || ||| || ||||| ||||| | Sbjct 32802 TAACACCTTCATAAACACCAGATATAATTCTTTGTGTAATAGAAACAGGATCAATATGGT 32743 Query 49108 CCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAA 49159 ||| | |||||||||||| | |||||||| || ||||||||||| Sbjct 32742 TTGGATCTAAACCATAACATAATCTAGCAATTCTAGAAGTGATTTTATCAAA 32691 >seq627 Length=179744 Score = 417 bits (462), Expect = 9e-112 Identities = 650/924 (70%), Gaps = 9/924 (1%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || | ||||||||||||||||||||| ||||| || ||||||| ||| Sbjct 173535 TTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTTTACCTGCTAATGAAATATT 173476 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT-CCTAATTCTAATA 18787 |||||||||||||||||||||| |||||||| || ||||| | | |||||| | | | Sbjct 173475 TTCCATAAAATCAAATGGATTTGAAACATTATA-ATATTTTTCATTACCTAATGCAACCA 173417 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 || |||||| || ||||||| || |||| ||||||| || |||||| |||| || Sbjct 173416 ATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCAGCATTCATACCTAATA 173357 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 | |||||| | ||||||| || | || || ||| ||| || || || | |||| Sbjct 173356 AAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAGAAACAGCTTCAGTAATAA 173297 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | || | | | | || || | | | ||||| ||| | | |||||||| Sbjct 173296 TTCTTTCAGCGATTTTTGGATCTGGTTTATTTTCCAAATGTTGAAATAATAGACATGCAA 173237 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 ||||| ||||| || || ||||||| ||||||||||| ||||| || ||||| |||| Sbjct 173236 AATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCATTTGAAAAAGTCAAACCTGGCA 173177 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| || |||| |||||||| || || | ||||||||| || |||||||| | ||||| Sbjct 173176 TCAACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATGAACCGGAAAAGAAAACACCTT 173117 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || ||||| || || | |||||| || | ||||| | || ||||||||| Sbjct 173116 CAACAGCAGCAAATGCCACCAATCTTTCAGCAAATAATGCATCTTCATCTTGAATCCATC 173057 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 | | ||||| ||||| || | ||| | ||| || || || |||| ||| || | Sbjct 173056 TAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAGTTTCAATAGCATTGAACAAGA 172997 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | || || | || |||||| | ||| | ||| ||||| | || |||| || Sbjct 172996 ATTCACTTTCTTTTGGATCTTTGATATAAGTATCGATCAAAAGCGAATATGTTTCACTAT 172937 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | |||||||| || || || || |||||||||||| | ||||||| ||||| |||| Sbjct 172936 GGATATTTTCCATCATGATTTGGAACCCGTAAAAACATTTAGCTTCTGGAATCTGCACTT 172877 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 || || || | || |||||||| ||||| || || ||||| ||| || ||||||| Sbjct 172876 CAGCACTGAAATTCTCCACCAAATTCTCATTGACAATCCCATCTGAAGCAGCGAAAAATG 172817 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTAA 19444 |||| || |||| ||| | |||||| | | | | ||||||| || | | Sbjct 172816 CTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCTATTATTCCAGTCGTGGA 172757 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 ||||||| || | ||| | |||||| | |||||||| ||||| || || ||| || Sbjct 172756 TATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAAAATGAAGCTTCAGCACGTTTGTAAG 172697 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAA 19564 | ||| || ||| | |||| || ||||| | ||||||||| |||| ||||| | Sbjct 172696 CTTGCCAGATTTCATGGTATTTGATTGGAAACAAAACAAATCTTCTTTTGTTTTC--CAC 172639 Query 19565 GAATA--GGTTCCATTTTTTGAAA 19586 |||| ||||| |||||| ||| Sbjct 172638 CAATAGCGGTTCGTTTTTTTCAAA 172615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103593467240