Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq627 297 3e-75 seq506 150 3e-31 seq631 138 2e-27 seq596 129 9e-25 >seq627 Length=179744 Score = 297 bits (328), Expect = 3e-75 Identities = 581/847 (69%), Gaps = 16/847 (2%) Strand=Plus/Minus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 ||||||| || || ||| |||| || |||||||| || || ||| | ||||| || Sbjct 173537 GCTTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTTTACCTGCTAATGAAATA 173478 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 | |||||||||||||||||| | |||||||||||||| | |||| | Sbjct 173477 TTTTCCATAAAATCAAATGGATTTGAAACATTATAATATTTTTCATTACCTAATGCAACC 173418 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040 ||||||||||| || |||||||| |||||||| |||||| | ||||||||||| | Sbjct 173417 AATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCAGCATTCATACCTAAT 173358 Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 | | ||| | ||||| || | || ||| || || ||||| || | || Sbjct 173357 AAAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAGAAACAGCTTCAGTAATA 173298 Query 18101 ATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATA-ATATAATAAACA 18159 || || | | | |||||| | | | || ||| | | | | | |||||| ||| Sbjct 173297 ATTCTT-TCAGC---GATTTTTGGATCTGGTTTATTTTCCAAATGTTGAAATAATAGACA 173242 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 |||||||||||||||| ||||||||||| | || ||||| || ||| || || || Sbjct 173241 TGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCATTTGAAAAAGTCAAACC 173182 Query 18220 GGGCATTATACCTCttttt-tttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 ||||| | ||| |||||| |||| |||||| || | || || || |||||||| | Sbjct 173181 TGGCATCA-ACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATGAACCGGAAAAGAAAA 173123 Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGCTCAG 18336 ||| ||||| ||| || || || | |||||||||||||| | || || | || | Sbjct 173122 CACCTTCAACAGCA-GCAAATGCCACCAATCTTTCAGCAAATAATGCATCTTCATCT-TG 173065 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||| | |||||||| ||| || || ||| | || |||||||| Sbjct 173064 AATCCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAGTTTCAATAGCATT 173005 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 ||||| || ||||||| | |||||| |||||||| ||||| || | ||||| | Sbjct 173004 GAACAAGAATTCACTTTCTTTTGGATCTTTGATATAAGTATCGATCAAAAGCGAATATGT 172945 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 |||| ||| || ||||||| || || || | ||||| || |||| || ||| Sbjct 172944 TTCACTATGGATATTTTCCATCATGATTTGGAACCCGTAAAAACATTTAGCTTCTGGAAT 172885 Query 18517 TTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 || | || || | |||| | || |||||||||||||| || || || || | || | Sbjct 172884 CTGCACTTCAGCACTGAAAT-TCTCCACCAAATTCTCATTGACAATCCCATCTGAAGCAG 172826 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTTCC 18632 |||||||||| ||||| |||||||| | ||||||| || || | ||| |||| Sbjct 172825 CGAAAAATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCTATTATTCC 172766 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | || | |||||||| || ||||| | |||||| | |||||||| || | ||| || Sbjct 172765 AGTCGTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAAAATGAAGCTTCAGCAC 172706 Query 18693 GTTTGTA 18699 ||||||| Sbjct 172705 GTTTGTA 172699 >seq506 Length=5049 Score = 150 bits (166), Expect = 3e-31 Identities = 177/238 (74%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || ||||||| ||||| || ||||| ||||| || ||||||||| Sbjct 1671 AAGATGCAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTCGAATCC 1730 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | ||| || || ||| ||||| ||||| |||||||| || || || || Sbjct 1731 TCTGACACCATTGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTGAC 1790 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| ||||| || | |||||| |||||||| || || || Sbjct 1791 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 1850 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT-GTAAAA 156056 || || ||||| | || ||||| || || || ||||| ||||| ||| |||||| Sbjct 1851 AACATTCAAAAAGAATCCACCCTTCACTTGGTTTTGAGATTGAGAGGTGGTGGTAAAA 1908 >seq631 Length=151218 Score = 138 bits (152), Expect = 2e-27 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| ||||||| |||||||| ||||| || || || ||||| ||| Sbjct 131174 AAAATGCAAATTTTTGTTAAAACTTTGACTGGGAAAACCATCACCTTGGAAGTTGAATCC 131233 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || ||||| || || || || || |||||||| || || || || Sbjct 131234 TCAGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAAGGGATTCCACCTGAC 131293 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||||| ||| ||||| ||| | ||||| |||||| || || || || Sbjct 131294 CAACAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACGTTGTCCGACTAC 131353 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | | ||||||| ||| |||| || || || || || ||||| ||||| || Sbjct 131354 A--ACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGTGG 131403 Score = 127 bits (140), Expect = 3e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| ||||| || || || ||||| ||| || Sbjct 131405 ATGCAAATCTTTGTGAAGACTTTGACTGGGAAAACCATCACTTTGGAAGTTGAATCCTCA 131464 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || || || |||||||| || || || || ||| Sbjct 131465 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAAGGGATTCCACCTGACCAA 131524 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| ||||| ||| | ||||| |||||| || || || || | Sbjct 131525 CAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACATTGTCCGACTACA-- 131582 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | ||||||| ||| |||| || || || || || ||||| ||||| |||| Sbjct 131583 ACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGTGGTG 131633 >seq596 Length=25494 Score = 129 bits (142), Expect = 9e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | ||||| || ||||| || ||||| || ||||||||||| || || | || Sbjct 12141 TTTGTCAAAACCTTAACTGGTAAGACTATCACTCTAGAAGTCGAATCCTCCGACACCATC 12082 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 ||||| ||| ||||| ||||| |||||||| || || || || |||||||||||| Sbjct 12081 GATAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAAAGATTG 12022 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| ||||| || | |||||| |||||||| || || || || || ||| Sbjct 12021 ATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAAA 11962 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 || | || ||||| || || || ||||| ||||| ||||| Sbjct 11961 GAATCCACTCTTCACTTGGTCTTGAGATTGAGAGGTGGTGT 11921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731865221035600