Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq627 246 6e-60 seq596 165 2e-35 seq506 150 4e-31 seq631 127 4e-24 >seq627 Length=179744 Score = 246 bits (272), Expect = 6e-60 Identities = 527/788 (67%), Gaps = 18/788 (2%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 || ||||||| || | ||||||||||||||||||| ||||||||||||||| Sbjct 173491 CTGCTAATGAAATATTTTCCATAAAATCAAATGGATTTGAAACATTATAATATTTTTCAT 173432 Query 49633 CTATC-AATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 || | ||| || ||||||||||| || ||||||||||||||||| ||| ||| || Sbjct 173431 -TACCTAATGCAACCAATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCA 173373 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||||| ||||| || || |||||||| |||| | || |||||| || Sbjct 173372 GCATTCATACCTAATAAAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAGAA 173313 Query 49752 acagcttgtttaattatcataattatattattttttgataa--tttatatttaatatgat 49809 ||||||| |||| || | || |||||| ||| ||||| || | ||| | Sbjct 173312 ACAGCTTCAGTAATAATTCT--TTCAGCGATTTTTGGATCTGGTTTATTTTCCAAATGTT 173255 Query 49810 tcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCAT 49869 | ||| || ||||||||||||||| |||| || || || ||| | || ||||||| Sbjct 173254 G---AAATAATAGACATGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCAT 173198 Query 49870 TACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 | |||||| || |||||||| || || | || || | |||||| |||| ||||| Sbjct 173197 TTGAAAAAGTCAAACCTGGCATCAACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATG 173138 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 || |||||||| | ||| || ||| |||||||| | | |||| | |||| | | Sbjct 173137 AACCGGAAAAGAAAACACCTTCAACAGCAGCAAATGCCACCAATCTTTCAGCAAATAATG 173078 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 | |||||| ||||| | |||||||| || ||||||| |||||| || ||| Sbjct 173077 CATCTTCATCTTGAATCCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAG 173018 Query 50050 TTTCTATAGCTTT---AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNA 50106 |||| ||||| || || |||||| |||| | | Sbjct 173017 TTTCAATAGCATTGAACAAGAATTCA---CTTTCTTTTGGATCTTTGATATAAGTATCGA 172961 Query 50107 TTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATT 50166 | || | ||||| ||||| ||| | | |||||| ||||| || ||||| Sbjct 172960 TCAAAAGCGAATATGTTTCACTATGGATATTTTCCATCATGATTTGGAACCCGTAAAAAC 172901 Query 50167 GTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAA 50226 | | ||||||| | ||| ||||| | | ||| || || ||||||||| |||| Sbjct 172900 ATTTAGCTTCTGGAATCTGCACTTCAGCACTGAAATTCTCCACCAAATTCTCATTGACAA 172841 Query 50227 TACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTT 50286 | ||||| || || ||||| ||||||||||| |||| ||| | ||||||| || | Sbjct 172840 TCCCATCTGAAGCAGCGAAAAATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCAT 172781 Query 50287 ---TTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAA 50343 || ||| | ||| | | ||| || || | ||| | ||||||| ||||||| Sbjct 172780 TCATTCTATTATTCCAGTCGTGGATATCTTTGGAAAGATCGATTTCTTCTGCAGTCCAAA 172721 Query 50344 ATGATGCT 50351 |||| ||| Sbjct 172720 ATGAAGCT 172713 >seq596 Length=25494 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||||| ||||||||| | | || || || || | ||| | ||||| || | Sbjct 11913 GTTCAATAACACCACCTCTCAATCTCAAGACCAAGTGAAGAGTGGATTCTTTTTGAATGT 11972 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||| || |||| |||| ||||||||||||||||||||||| ||||| |||| Sbjct 11973 TGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTT 12032 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || |||||||| ||||| ||||| ||| || ||| || | || | Sbjct 12033 GGTCAGGTGGAATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTATCGATGGTGTCGG 12092 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 | ||||| ||||||||||| || || ||||||||||| ||||| | ||| Sbjct 12093 AGGATTCGACTTCTAGAGTGATAGTCTTACCAGTTAAGGTTTTGACAAA 12141 >seq506 Length=5049 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || | || | ||||| || || || ||||| Sbjct 1901 ACCACCTCTCAATCTCAAAACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCAGA 1842 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| ||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 1841 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 1782 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| ||||| ||| ||||| || | || || ||||| || Sbjct 1781 GATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTGTCAATGGTGTCAGAGGATTCGAC 1722 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| | |||||||||||||| || || ||||||| || || ||||| || Sbjct 1721 TTCCAAGGTAATGGTTTTACCTGTCAAAGTTTTAACGAAAATTTGCATCTT 1671 >seq631 Length=151218 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | || || || || | || | ||| || ||| || || || Sbjct 131406 ATCCCACCTCTCAATCTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCG 131347 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | || ||||| |||||||||||||| || ||||| ||||| |||||| Sbjct 131346 GACAACGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGT 131287 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || || || || || | ||||| ||||| Sbjct 131286 GGAATCCCTTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGAGGATTCA 131227 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | || |||||||| ||||| || ||||||| ||| || |||||||| Sbjct 131226 ACTTCCAAGGTGATGGTTTTCCCAGTCAAAGTTTTAACAAAAATTTGCATTTT 131174 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || | || | ||| || ||| || || || || Sbjct 131632 ACCACCTCTCAATCTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 131573 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||||| | || ||||| |||||||||||||| || ||||| ||||| |||||||| Sbjct 131572 CAATGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGG 131513 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| || || || || || || || || | ||||| ||||| || Sbjct 131512 AATCCCTTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGAGGATTCAAC 131453 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | ||| |||||||| ||||| || || || | ||| || ||||| Sbjct 131452 TTCCAAAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAGATTTGCAT 131405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984470653285350