Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq627 266 6e-66 seq596 163 5e-35 seq506 159 6e-34 seq631 138 2e-27 >seq627 Length=179744 Score = 266 bits (294), Expect = 6e-66 Identities = 388/543 (71%), Gaps = 9/543 (2%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| || ||||||||| ||||||| || || || ||||| ||| ||||||| || Sbjct 173535 TTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTGGTTTTACCTGCTAATGAAATATT 173476 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATA 38949 | ||||||||||||||||||| ||||||||||||||| || | ||| || | Sbjct 173475 TTCCATAAAATCAAATGGATTTGAAACATTATAATATTTTTCAT-TACCTAATGCAACCA 173417 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 |||||||||| || ||||||||||||||||| ||| ||| || ||||||||| |||| Sbjct 173416 ATAATCTATCAGCAACAAATTCAACATATTGATTCATCAATGCAGCATTCATACCTAATA 173357 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 | || || |||||||| |||| | || |||||| || ||||||| |||| | Sbjct 173356 AAGAAACAGGCAATGCATCTTCAAAATATCTTTTTTCAATAGAAACAGCTTCAGTAATAA 173297 Query 39070 tcataattatattattttttgataa--tttatatttaatatgattcgcatataGTAAACA 39127 | | || |||||| ||| ||||| || | ||| | | ||| || ||| Sbjct 173296 TTCT--TTCAGCGATTTTTGGATCTGGTTTATTTTCCAAATGTTG---AAATAATAGACA 173242 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||||||||| || |||| ||||| || ||| | || |||||||| |||||| || || Sbjct 173241 TGCAAAATCAGTGTGTAGCCCTTCATCTCTACAAATCAATTCATTTGAAAAAGTCAAACC 173182 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 |||||| || || | || || | |||||| |||| ||||| || |||||||| | Sbjct 173181 TGGCATCAACCCCTTTTTCTTTAACCAAAAAATTGCAGCAAATGAACCGGAAAAGAAAAC 173122 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 ||| || ||| |||||||| | | |||| | |||| | | | |||||| ||| Sbjct 173121 ACCTTCAACAGCAGCAAATGCCACCAATCTTTCAGCAAATAATGCATCTTCATCTTGAAT 173062 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| | || ||||| || ||||||| |||||| || ||| |||| ||||| || || Sbjct 173061 CCATCTAATAGCCCATTCAGCTTTTTCTTTGATTTGTGGAATAGTTTCAATAGCATTGAA 173002 Query 39368 TAA 39370 || Sbjct 173001 CAA 172999 >seq596 Length=25494 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||| ||||||||| | || || || || || | ||| | ||||| ||| || || Sbjct 11918 ATAACACCACCTCTCAATCTCAAGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAG 11977 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || |||| || | || |||||||||||||||||||| || ||||| ||||||||| Sbjct 11978 TCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCA 12037 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||| ||||| ||||| ||| || ||| || || || || ||| Sbjct 12038 GGTGGAATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTATCGATGGTGTCGGAGGAT 12097 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 || ||||||||||| || || ||||||||||| ||||| Sbjct 12098 TCGACTTCTAGAGTGATAGTCTTACCAGTTAAGGTTTT 12135 >seq506 Length=5049 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || || || || || | || | ||||| ||| || || || || Sbjct 1901 ACCACCTCTCAATCTCAAAACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCAGA 1842 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || |||||||||||||||||||| || ||||| |||||||||||||| Sbjct 1841 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 1782 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||| ||||| ||||| ||| ||||| || || || || ||||| || Sbjct 1781 GATACCTTCTTTGTCTTGGATTTTGGCTTTAACATTGTCAATGGTGTCAGAGGATTCGAC 1722 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| | |||||||||||||| || || ||||||| ||| || ||||| || Sbjct 1721 TTCCAAGGTAATGGTTTTACCTGTCAAAGTTTTAACGAAAATTTGCATCTT 1671 >seq631 Length=151218 Score = 138 bits (152), Expect = 2e-27 Identities = 174/238 (73%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || || || || || | || | ||| || || || || || Sbjct 131406 ATCCCACCTCTCAATCTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCG 131347 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| ||||| ||||||||||||||||| ||||| |||||||||||| Sbjct 131346 GACAACGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGT 131287 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || || || || || ||||| ||||| Sbjct 131286 GGAATCCCTTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGAGGATTCA 131227 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTAT 172077 ||||| | || |||||||| ||||| || ||||||| || || |||||||| |||| Sbjct 131226 ACTTCCAAGGTGATGGTTTTCCCAGTCAAAGTTTTAACAAAAATTTGCATTTT-TTAT 131170 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | || || || || || | || | ||| || || || || || || Sbjct 131632 ACCACCTCTCAATCTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 131573 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || |||| ||||| ||||||||||||||||| ||||| |||||||||||||| Sbjct 131572 CAATGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGG 131513 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||| || || || || || || || || || ||||| ||||| || Sbjct 131512 AATCCCTTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGAGGATTCAAC 131453 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | ||| |||||||| ||||| || || || | || || ||||| Sbjct 131452 TTCCAAAGTGATGGTTTTCCCAGTCAAAGTCTTCACAAAGATTTGCAT 131405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905127616177800