Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq664 289 7e-73 seq627 163 7e-35 seq710 113 1e-19 seq693 91.5 3e-13 >seq664 Length=41649 Score = 289 bits (320), Expect = 7e-73 Identities = 582/860 (68%), Gaps = 5/860 (1%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||||||||| | ||| | | |||||| | | ||||||| | || | Sbjct 33081 TATTTTGGTTTCAAAACATTGGAAAGATCGTATTTATTAAGAATCAATGGACAAATTGCT 33140 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | |||||||| || | | | ||||| | || |||||||| |||||| || Sbjct 33141 GAAAGACCTCAACATTTGATCATGAGAGTTGCTGTCGGGATTCATGGTTCAGATATTGAA 33200 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCTAC 110482 || | ||| |||| || | | | | || | | | ||||| |||| || Sbjct 33201 AAAGTCTTGGAAACTTATAATTTGATGTCTTTGA-GATATTTCACACATGCATCTCCAAC 33259 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 |||| || || ||||| || ||| || |||| || || ||| | | || || Sbjct 33260 TTTATTCAATGCTGGAACACCAAGACCTCAAATGTCTTCATGTTTCCTTGTTGCTATGAA 33319 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || ||||| ||||| |||||||||||| || | |||||| |||| | |||||||||| Sbjct 33320 AGACGATTCCATTGATGGTATTTATGATACTTTAAAAGAATGTGCTTTGATTTCTAAAAC 33379 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| |||| ||||| ||||| | |||| || | |||| ||| Sbjct 33380 TGCTGGTGGTATTGGTCTTCATATTCATAATATTAGATCAACCGGTTCTTATATTGCAGG 33439 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || || |||| | |||| | |||||||| | ||||| ||||| | ||||||| Sbjct 33440 TACTAATGGGACTTCTAATGGATTGATTCCAATGATTAGAGTTTTCAATAATACTGCAAG 33499 Query 110723 ATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| |||||||||| ||| ||| ||| | |||||| | ||| | ||||| || Sbjct 33500 ATATGTTGATCAAGGTGGTAATAAAAGACCTGGTGCTTTTGCTCTTTATTTAGAACCATG 33559 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| ||||| ||||| || | || |||| |||||||| || |||||| || Sbjct 33560 GCATAGTGATATTTTTGATTTTATTGATATTCGGAAAAATCATGGTAAAGAAGAAATTAG 33619 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 |||| | ||||| ||| |||| | ||| || |||||||||| ||| || ||| |||| Sbjct 33620 AGCAAGAGATTTGTTTCCTGCATTATGGGTTCCAGATTTATTTATGCAAAAAGTTAAAGA 33679 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 |||| ||| | | | | ||| | |||| ||| || |||||| ||||| Sbjct 33680 AAATTCAGATTGGACATTGTTTTCTCCAAGTGAAGCTCCAGGTTTAAGTGATGTTTATGG 33739 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAAT 111019 ||| |||||| | | ||| | | ||||| |||||| | | | ||| || Sbjct 33740 TGCAGATTTTGAAAAATTGTACAATAGATATGTTTCAGAAGGAAGAGGTAGAAAAACTAT 33799 Query 111020 TCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTA 111079 | ||| ||| || | |||| ||| | ||| ||||| |||||| || || || | Sbjct 33800 TAAAGCACAAAAATTATGGTATGCTATCTTGGAAGCACAAACTGAAACAGGTACACCATT 33859 Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 |||| | || |||||| | ||| ||||||||||||| ||||||||||| || || Sbjct 33860 TATTGTTTACAAAGATGCTTGTAACAAAAAATCTAATCAAAAAAATTTAGGAACTATCAA 33919 Query 111140 GTCTAGTAATTTGTGCTGTG 111159 || ||||||||| |||| Sbjct 33920 ATCATCTAATTTGTGTTGTG 33939 >seq627 Length=179744 Score = 163 bits (180), Expect = 7e-35 Identities = 465/705 (66%), Gaps = 21/705 (3%) Strand=Plus/Plus Query 131489 TTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACC 131548 || ||||||| ||||| |||||| | |||||||||| | || ||| | || || Sbjct 172720 TTTTGGACTGCAGAAGAAATCGATCTTTCCAAAGATATCCACGACTGGAATAATAGAA-- 172777 Query 131549 TTGAATGAAAA----AGATTTTG--TTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGAT 131602 |||||||||| ||||||| || | |||| | ||||| ||||| | ||| Sbjct 172778 -TGAATGAAAATGAAAGATTTTTCATTAGTAGAGTTTTAGCATTTTTCGCTGCTTCAGAT 172836 Query 131603 GGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTA 131662 || ||||| | ||| ||| | || ||||||| | ||| | | ||||| |||| Sbjct 172837 GGGATTGTCAATGAGAATTTGGTGGAGAATTTCAGTGCTGAAGTGCAGATTCCAGAAGCT 172896 Query 131663 ACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTA 131722 | || || ||| || ||| | | ||| ||| ||||| || | ||||| | Sbjct 172897 AAATGTTTTTACGGGTTCCAAATCATGATGGAAAATATCCATAGTGAAACATATTCGCTT 172956 Query 131723 TTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTG---ATGCTGTA 131779 ||||| || | | | | ||| || | | || || | |||| || ||||| | Sbjct 172957 TTGATCGATACTTATATCAAAGATCCAAAAGA---AAGTGAATTCTTGTTCAATGCTATT 173013 Query 131780 AATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGAT 131839 | | |||| ||| ||| | ||||| ||||||||||||| ||||||||||||||| Sbjct 173014 GAAACTATTCCACAAATCAAAGAAAAAGCTGAATGGGCTATTAGATGGATTCAAGATGAA 173073 Query 131840 TCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCA 131899 || ||| || |||| | || || |||||| |||||||||| | |||||||| Sbjct 173074 GATGCATTATTTGCTGAAAGATTGGTGGCATTTGCTGCTGTTGAAGGTGTTTTCTTTTCC 173133 Query 131900 GGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTG 131959 ||| | || ||| || |||||| | ||||| || |||||||| || | | || Sbjct 173134 GGTTCATTTGCTGCAATTTTTTGGTTAAAGAAAAAGGGGTTGATGCCAGGTTTGACTTTT 173193 Query 131960 TCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATAT-TAATCTA 132018 || ||| |||| || | |||||||||| | || ||||| ||||| || | || | | Sbjct 173194 TCAAATGAATTGATTTGTAGAGATGAAGGGCTACACACTGATTTTGC-ATGTCTATTATT 173252 Query 132019 TAGAAAATTTGCTGATAAACTTGATGAAAATAAT--ATTAAACAACTTATAAGCGAAGCA 132076 | | | || | |||||| ||| ||| ||| | ||| || |||| | ||||| Sbjct 173253 TCAACATTTGGAAAATAAACCAGATCCAAA-AATCGCTGAAAGAA-TTATTACTGAAGCT 173310 Query 132077 GTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAAT 132136 ||| ||| || || | | || ||| || |||||| ||| | || |||||| Sbjct 173311 GTTTCTATTGAAAAAAGATATTTTGAAGATGCATTGCCTGTTTCTTTATTAGGTATGAAT 173370 Query 132137 GCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTA 132181 |||| | ||||| | || ||||||| ||||||||| | ||| Sbjct 173371 GCTGCATTGATGAATCAATATGTTGAATTTGTTGCTGATAGATTA 173415 >seq710 Length=93100 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| | ||||||||||| || || ||||| || ||||| || |||| |||||| Sbjct 34102 AGACATATTGTTGACAATGATTTTGTGCTTTTCAACAGACAACCTTCTTTGCACAAAATG 34161 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||||||||| |||| | ||| ||||| | | | || ||| |||| ||| || | Sbjct 34162 TCTATGATGTCTCACAGAGTTAAAGTGATGCCATATTCTACGTTTAGATTGAATTTATCT 34221 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || |||||||| ||||||||||| |||||||||||| | || || |||||| Sbjct 34222 GTTACCTCTCCGTATAATGCAGATTTTGATGGGGATGAAATGAATTTACACGTTCCTCAA 34281 Score = 95.1 bits (104), Expect = 3e-14 Identities = 174/249 (70%), Gaps = 12/249 (5%) Strand=Plus/Minus Query 72169 ACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGC-----AAGT-GTA 72222 ||||| |||||||||||||||||||||| | ||| | ||| || | || || Sbjct 31594 ACTTTCCCAAACACAACGTGTTTGTTATCCAGATGGGTCAAAGGAGCGTTGGATGTTGTT 31535 Query 72223 ATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAG--AAACCAAACCTG 72280 ||||| |||| ||| ||| | | || || | || |||||| ||| ||| || Sbjct 31534 ATGAAACATTGTGAGCCATTGGTGTTTGGTCCAGCATTGGCCATACTCAAAAGAAA--TG 31477 Query 72281 CTTCTGAATGCTTTAATAA-GAAATTCTCATCTTCAAAAGTTTCTCCATATATACTTTGA 72339 | | | || |||| | |||||| ||||||||||| |||| ||||| ||||||| | Sbjct 31476 GTCCAGTGTG-TTTATGAGTGAAATTTTCATCTTCAAACTTTTCACCATAAATACTTTCA 31418 Query 72340 CCTGAGCTTCCATCAAAGTTCACAATATCACCTCCTTGAACCATAAAATTATTAATTACT 72399 || | | ||||| ||||| || |||||| ||||| ||| |||| ||| || ||| Sbjct 31417 CCACCGGTCCCATCGAAGTTTGTAAAATCACCAAATTGAAGCATGAAATCATTGATGACT 31358 Query 72400 CTATGGAAA 72408 || |||||| Sbjct 31357 CTGTGGAAA 31349 >seq693 Length=168755 Score = 91.5 bits (100), Expect = 3e-13 Identities = 117/158 (74%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| ||||| || ||||| || | || | | | ||||| || | ||| | | ||| Sbjct 19538 GTTCTTTTCAACAGACAACCGTCCTTACACAGACTATCTATTTTGTCCCATTATGCAAAA 19597 Query 305390 GTATTATCT-GGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 || | || ||| || |||| |||| || | | ||| |||||| || |||||||| | Sbjct 19598 GTCAGACCTTGGA--GAACTTTCAGATTGAACGAATGTGTTTGTACACCATATAATGCAG 19655 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||||| |||||||||||| ||||||| || ||| Sbjct 19656 ATTTTGATGGTGATGAAATGAATTTGCATGTGCCACAA 19693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186801532325101