Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq627 298 4e-76 seq602 185 7e-42 seq671 84.2 2e-11 >seq627 Length=179744 Score = 298 bits (330), Expect = 4e-76 Identities = 614/892 (69%), Gaps = 31/892 (3%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| |||||||||| |||| ||||| || |||||| |||||| || | Sbjct 172654 AGATTTGTTTTGTTTCCAATCAAATACCATGAAATCTGGCAAGCTTACAAACGTGCTGAA 172713 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATTGC 43815 || ||||||||||| ||||||||| | ||| | | ||||| | ||| | |||| | Sbjct 172714 GCTTCATTTTGGACTGCAGAAGAAATCGATCTTTCCAAAGATATC-CACGACTGGAAT-- 172770 Query 43816 ATTAAAACCACAAGAAAA----ACATTTTATATCTTTGG--TTTTGGCGTTTTTTGCTGC 43869 | || || | | ||||| | ||||| || | | |||| || ||||| ||||| Sbjct 172771 AATAGAATGA-ATGAAAATGAAAGATTTTTCATTAGTAGAGTTTTAGCATTTTTCGCTGC 172829 Query 43870 GAGCGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTAC 43928 || ||||| |||||||| |||||||| || | | || ||||| || | | Sbjct 172830 TTCAGATGGGATTGTCAATGAGAATTTGGTGGAGAATTTCAGTGCT-GAAGTGCAGATTC 172888 Query 43929 CAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGT 43988 ||||||| ||||||||| ||||| ||||| || |||||||| ||| |||| | Sbjct 172889 CAGAAGCTAAATGTTTTTACGGGTTCCAAATCATGATGGAAAATATCCATAGTGAAACAT 172948 Query 43989 ACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA---GCATCGATTGTTTA 44045 | ||| |||| ||||| || ||||||||| || |||| | || ||||| | Sbjct 172949 ATTCGCTTTTGATCGATACTTATATCAAAGATC--CAAAAGAAAGTGAATTC-TTGTTCA 173005 Query 44046 ATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT-- 44103 |||| || ||||| | || || ||| | ||||| || ||||| ||| |||||| Sbjct 173006 ATGCTATTGAAACTATTCCACAAATCAAAGAAAAAGCTGAATGGGCTATTAGATGGATTC 173065 Query 44104 -AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTT 44162 | || | ||| | |||| ||| || | || || ||||| | ||| ||||| ||| Sbjct 173066 AAGATGAAGATGCATTATTTGCTGAAAGATTGGTGGCATTTGCTGCTGTTGAAGGTGTTT 173125 Query 44163 TCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGT 44222 ||||||| || || ||||| || || ||||||||||||||| || |||||||| || | Sbjct 173126 TCTTTTCCGGTTCATTTGCTGCAATTTTTTGGTTAAAGAAAAAGGGGTTGATGCCAGGTT 173185 Query 44223 TGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCT 44282 |||| ||||||||||| || || || | |||||||| |||| |||||||| || Sbjct 173186 TGACTTTTTCAAATGAATTGATTTGTAGAGATGAAGGGCTACACACTGATTTTGCATGTC 173245 Query 44283 TGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA--CAATTACAGATATTGT 44340 | ||| || | || | ||| | |||| || || || | | | | ||| ||| | Sbjct 173246 TATTATTTCAACAT-TTGGAAA--ATAAACC-AGATCCAAAAATCGCTGAAAGA-ATTAT 173300 Query 44341 TGTAGAGGCAGTAAAGATAG-AACAAGAATTTATGACAACAGCATTACCTGTAAATTTAA 44399 | || || || || | || |||| || ||| | ||||| ||||| |||| Sbjct 173301 TACTGAAGCTGTTTCTATTGAAAAAAGATATTTTGA-AGATGCATTGCCTGTTTCTTTAT 173359 Query 44400 TAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTT 44459 |||| ||||||| |||||||| |||||| |||||| |||| ||| | ||| | Sbjct 173360 TAGGTATGAATGCTGCATTGATGAATCAATATGTTGAATTTGTTGCTGATAGATTATTGG 173419 Query 44460 TGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATA 44519 | | | | ||| || ||| | |||| ||| ||| || ||||||||||||||||||| Sbjct 173420 TTGCATTAGGTAATGAAAAATATTATAATGTTTCAAATCCATTTGATTTTATGGAAAATA 173479 Query 44520 TTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 |||| || | ||| ||||| || || ||||||||| | ||| || ||||| Sbjct 173480 TTTCATTAGCAGGTAAAACCAATTTCTTTGAAAAAAGAGTTTCTGATTATCA 173531 >seq602 Length=60854 Score = 185 bits (204), Expect = 7e-42 Identities = 380/559 (68%), Gaps = 16/559 (3%) Strand=Plus/Minus Query 19232 AAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTG 19291 |||||||| |||| || ||| || ||||| || |||| ||| | |||||||||| Sbjct 13260 AAGACATGGGTGTTGGTGGGTTGGACAAGGAGTTCACTCAAATTTTTAGAAGAGCATTTG 13201 Query 19292 TGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATT-GGGATGTAAACATGTTCGTGGA 19350 || | ||||| | ||||||||||| | || ||||| | |||||| || Sbjct 13200 CCTCAAGAATTTTTCCACCAGATGTCATTGCTAAGTTGGGGATCT-CTCATGTTAAGGGT 13142 Query 19351 CTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACT---TAGT 19407 ||| | | | ||| ||||| ||| || ||||| || ||||| ||| || | || Sbjct 13141 CTTCTTTTGTTTGGTCCACCCGGTACAGGTAAAACTTTGATTGCTAGAAAAATCGGTACC 13082 Query 19408 AAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATAT 19467 | || | | || | ||| |||||||| |||||||||||||| || | |||||| Sbjct 13081 ATGTTGAATGCCAAGGAGCCT---AAAATTGTTAATGGTCCTGAAATTTTGAGTAAATAC 13025 Query 19468 GTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 || ||| || || |||||| | || ||||||| ||||| || | |||| | ||| Sbjct 13024 GTGGGTTCCTCTGAGGAAAATATTAGAAATTTGTTTAAGGACGCAGAGGCAGAATACAAA 12965 Query 19528 CGTTTAGGGCGCA-AAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTG 19586 | | || | | ||||||| ||||| ||||| || | |||||||||||| | ||| Sbjct 12964 -GCGAAAGGAGAAGAAAGTTCCTTGCATATTATCATTTTTGATGAATTGGACTCTGTCTT 12906 Query 19587 TAAGCAAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACT 19640 ||||||||||| || || || | || || ||||| ||||||||||||| | Sbjct 12905 CAAGCAAAGAGGGTCAAGAGGTGATGGTACAGGGGTTGGTGACAATGTTGTCAATCAATT 12846 Query 19641 CCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 | | ||| | || |||||| | || | || || ||||| |||||||| ||||| || Sbjct 12845 GTTAGCCAAAATGGATGGTGTTGATCAGTTAAACAACATTTTGGTTATTGGTATGACCAA 12786 Query 19701 TAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGA 19760 | | || || || || | ||| ||||| |||| ||| | || ||| | | | || Sbjct 12785 TCGTAGAGATTTGATCGATAACGCGTTATTGAGACCTGGTAGATTTGAAGTTCAAGTGGA 12726 Query 19761 AATTAACTTACCCGATGAA 19779 ||| || || || |||||| Sbjct 12725 AATCAAGTTGCCAGATGAA 12707 >seq671 Length=59753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATA 40918 |||||||||||||||||||||||||| ||||||| | |||||||||||||| |||| Sbjct 43219 GAAGGTGATCTTGGTCCTGTTTATGGGTTTCAGTGGAGACATTTTGGAGCAGAATA 43164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452410599705