Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq631 113 3e-20 seq506 98.7 7e-16 seq596 89.7 4e-13 >seq631 Length=151218 Score = 113 bits (124), Expect = 3e-20 Identities = 172/242 (71%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 27777 ACACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGA 27836 |||||||| ||||||||||||||||| |||||| | ||||||||| || || | || Sbjct 131165 ACACAATAA-AAAATGCAAATTTTTGTTAAAACTTTGACTGGGAAAACCATCACCTTGGA 131223 Query 27837 TGTCGAAAGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGT 27894 || ||| | | ||| || |||| ||||| || || ||||||||||| Sbjct 131224 AGTTGAATCCTCAGACACCATCGACAAC--GTCAAGTCCAAGATCCAGGACAAAGAAGGG 131281 Query 27895 GTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGC 27954 |||| || || ||| | || |||||||| || ||||| ||||| |||| | | Sbjct 131282 ATTCCACCTGACCAACAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACG 131341 Query 27955 TTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGC 28014 |||||||| |||||||||||||| ||| || | || ||||||||| | ||| | || Sbjct 131342 TTGTCCGACTACAACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGT 131401 Query 28015 GG 28016 || Sbjct 131402 GG 131403 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| ||| | ||||||||| || || | || || ||| | | Sbjct 131405 ATGCAAATCTTTGTGAAGACTTTGACTGGGAAAACCATCACTTTGGAAGTTGAATCCTCA 131464 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||||||||| |||| || | Sbjct 131465 GACACCATCGACAAC--GTCAAGTCCAAGATCCAGGACAAAGAAGGGATTCCACCTGACC 131522 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || |||||||| || ||||| ||||| |||| | | |||||||| |||| Sbjct 131523 AACAAAGATTGATTTTTGCTGGTAAACAGTTGGAAGACGGCAGAACATTGTCCGACTACA 131582 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | || ||||||||| | ||| | || || Sbjct 131583 ACATCCAAAAGGAGTCGACCCTCCACTTGGTTTTGAGATTGAGAGGTGG 131631 >seq506 Length=5049 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || |||||| | || || ||| ||||| | || |||||| | Sbjct 1671 AAGATGCAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTCGAATCC 1730 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || ||||| || ||| ||||| |||||||||||| | || | Sbjct 1731 TCTGACACCATTGACAAT--GTTAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCTG 1788 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || ||||| || ||||||||||| || | | | ||||| || | Sbjct 1789 ACCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACT 1848 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||||| ||| | || ||||||||| | ||| | || || Sbjct 1849 ACAACATTCAAAAAGAATCCACCCTTCACTTGGTTTTGAGATTGAGAGGTGG 1900 >seq596 Length=25494 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 10/224 (4%) Strand=Plus/Minus Query 27798 TTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACCGACGATGT 27857 |||||| ||||| | ||||| || ||| || | || |||||| | ||||| Sbjct 12142 TTTTGTCAAAACCTTAACTGGTAAGACTATCACTCTAGAAGTCGAATCCTCCGAC----- 12088 Query 27858 ACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAA 27912 || |||| |||||| ||||| |||||||||||| |||| || || ||| Sbjct 12087 ACCATCGATAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAA 12028 Query 27913 CGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATC 27972 | || || ||||| || ||||||||||| || | | | ||||| || |||||||| Sbjct 12027 AGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATT 11968 Query 27973 CAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||| | || ||||| ||| | ||| | || || Sbjct 11967 CAAAAAGAATCCACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 11924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355859186228907