Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20vineae_20[genbank_20GCA_5F002141495.1_202017-05-16] 741 sequences; 11,662,932 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq596 168 2e-36 seq631 165 2e-35 seq506 165 2e-35 seq392 86.0 1e-11 >seq596 Length=25494 Score = 168 bits (186), Expect = 2e-36 Identities = 160/202 (79%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| ||||||||||||||||| | ||||| || | ||||||||| || Sbjct 11935 TCTCAAGACCAAGTGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 11994 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| ||||| | || ||||||||| || ||||||||||| || Sbjct 11995 ATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTT 12054 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||||||| ||| || || || ||||||||||| |||| ||| || |||| |||| Sbjct 12055 GTCTTGGAT-TTTGGCTTTGACGTTATCGATGGTGTCGGAGGATTCGACTTCTAGAGTGA 12113 Query 225677 TCGTCTTGCCCGTCAAAGTTTT 225698 | ||||| || || || ||||| Sbjct 12114 TAGTCTTACCAGTTAAGGTTTT 12135 >seq631 Length=151218 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | |||||| || || || ||||||| ||||| |||| ||| ||||| || Sbjct 131392 TCTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAACGTTCTGCC 131333 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||| || ||||| || || | || ||||||||| || ||||| ||||| || Sbjct 131332 GTCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGGAATCCCTTCTTT 131273 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| || |||||||||||||||| ||| || || || ||||| Sbjct 131272 GTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGAGGATTCAACTTCCAAGGTGAT 131213 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || ||||||||||| | || | ||||||||| Sbjct 131212 GGTTTTCCCAGTCAAAGTTTTAACAAAAATTTGCATTTT 131174 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | |||||| || || || ||||||| ||||| |||| ||| ||||| || Sbjct 131620 TCTCAAAACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAATGTTCTGCC 131561 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||| || ||||| || || | || ||||||||| || ||||| ||||| || Sbjct 131560 GTCTTCCAACTGTTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGGAATCCCTTCTTT 131501 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| || |||||||||||||||| ||| || || || ||||| Sbjct 131500 GTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCTGAGGATTCAACTTCCAAAGTGAT 131441 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || |||||||| || | || | |||||| Sbjct 131440 GGTTTTCCCAGTCAAAGTCTTCACAAAGATTTGCAT 131405 >seq506 Length=5049 Score = 165 bits (182), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| || |||||||||||||| | ||||| || | ||||||||| || Sbjct 1889 TCTCAAAACCAAGTGAAGGGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACC 1830 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | || || ||||| ||||| | || ||||||||| || || |||||||| || Sbjct 1829 ATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTT 1770 Query 225618 GTCTTGGATCTTTTGCTTCA-CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||||||| ||| |||| | || || |||||||| |||| ||| || || || || | Sbjct 1769 GTCTTGGAT-TTTGGCTTTAACATTGTCAATGGTGTCAGAGGATTCGACTTCCAAGGTAA 1711 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | || || || ||||||||||| | ||| | |||||| || Sbjct 1710 TGGTTTTACCTGTCAAAGTTTTAACGAAAATTTGCATCTT 1671 >seq392 Length=8970 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||| |||||||||||||||||||| | | ||||| || || |||| Sbjct 2755 TTCTGGATGACCAAAGAATCAGAATAAATGTTGATATAATACTGGATCACCACCACCTGC 2814 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | ||||| || ||||||||| |||||||| |||| |||| Sbjct 2815 TACTTCAAAGAATGAAGTATTAAAGTTTCTATCCATTAATAACA 2858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192519878034254