Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 219 4e-52 seq6 107 2e-18 seq1 105 7e-18 >seq4 Length=1381050 Score = 219 bits (242), Expect = 4e-52 Identities = 562/849 (66%), Gaps = 10/849 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||| | || | |||||| ||||| | ||||| || || |||| |||||| Sbjct 293823 GAAAACCCTAGTCGTTACGTGATCTTCCCTCTCAGATACCACGAGATCTGGCAAATGTAC 293882 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || || || || || |||||||||| ||| ||| | ||| || || ||||| Sbjct 293883 AAGAAAGCTGAAGCTTCTTTCTGGACCGCCGAAGAGCTCGACTTGAGTAAAGACACCCAA 293942 Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT--CAAGCACGTGCTGGCCTTTT 116768 |||||| | |||||| ||||||||| | ||||| | || | | ||||||| | Sbjct 293943 GACTGGAACAGCTTGACCGACAACGAAAGATTCTTCATTTCTAGAATCT--TGGCCTTCT 294000 Query 116769 TCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGC 116828 | || ||| || || ||||||||||| || ||||||| ||| | || |||| Sbjct 294001 TTGCTGCCTCTGATGGTATCGTCAACGAAAACTTGGTCGAAAACTTCTCCTCTGAAGTGC 294060 Query 116829 AGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGG 116888 |||| | || || || |||||||| || || ||| ||||| ||| | ||||| | Sbjct 294061 AGGTCACTGAAGCCAAATGTTTCTACGGTTTCCAAATCATGATGGAAAACATCCACTCCG 294120 Query 116889 AAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT--T 116946 ||| || ||| | || ||||| ||| | | | |||| |||| || | Sbjct 294121 AAACTTACTCGTTATTGATTGACACCTACATCAAGGATCCAAAGGA--AGCTGACTTCTT 294178 Query 116947 GTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTG 117006 ||| ||||||||||| | || || ||| |||| |||||||||| ||||| || | || Sbjct 294179 GTTCAACGCCATCGACAACATCCCATGCATCAAGAAGAAGGCCGACTGGGCTTTGAGATG 294238 Query 117007 GATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 ||| | | || || ||||| || | |||| ||||| || |||||||| || Sbjct 294239 GATTAGTGACGACGACGCTTTGTTCGGTGAAAGATTGGTTGCCTTTGCCGCCGTCGAAGG 294298 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 | ||||| || || || || | || || ||| | ||||| | || ||||| Sbjct 294299 TATTTTCTTCTCTGGTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTAAGATGCC 294358 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 ||| |||||||| ||||||| | |||| | ||||| ||| |||| ||||||||| Sbjct 294359 TGGCTTGACTTTCTCCAACGAGTTGATCTGTCGTGACGAAGGTTTGCACACCGACTTTGC 294418 Query 117187 CTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGT 117246 ||| ||| ||||| || ||| | |||| | | | | || ||||| | Sbjct 294419 CTGCTTGTTGTTCTCCCACTTGCAAAACAGACCAAACCCAACCATTGTTGAAAAGATCAT 294478 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGC-GTCTGC 117305 ||||| || || ||||||| | ||| ||||||| || |||| ||| | || Sbjct 294479 TACCGAAGCTGTTTCCATCGAAAAAGAATTCTTCACCGATGCTTTGCC-ATGCAGCTTGT 294537 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 |||| | || || ||||| |||||| | ||||||||||||||||| || || Sbjct 294538 TGGGTATGAACAAGGACTTGATGTGCCAATACGTTGAGTTCGTCGCCGACAGATTGTTGG 294597 Query 117366 TCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCA 117425 | | ||| || ||| ||||||| ||||||| | ||||| ||| | || Sbjct 294598 TTGCCTTGGGTAACGAAAAGTTCTACAACGTCACCAACCCATTCGACTTCATGGAAAACA 294657 Query 117426 TCTCCTTGG 117434 ||||||||| Sbjct 294658 TCTCCTTGG 294666 >seq6 Length=1120317 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || ||||| ||| | || |||||| | || Sbjct 962160 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATTACCTTGGAAGTCGAATCTTCC 962219 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| ||||||| ||||| || || || || | ||||| Sbjct 962220 GACACCATCGACAACG-TCAAGTCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 962278 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| || || || || |||| |||| | ||| | ||||||||| Sbjct 962279 GCAAAGATTAATCTTTGCCGGTAAGCAATTGGAAGACGGCAGAACCTTGTCCGACTACAA 962338 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| ||||| |||| || || | || ||| | ||||| || || Sbjct 962339 CATCCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 962386 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || |||||||| | || || ||| || || Sbjct 962388 ATGCAAATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCCTCC 962447 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| ||||| | ||||| || || || || | ||||| Sbjct 962448 GACACCATCGACAACG-TCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCAGACCA 962506 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| ||| || || || |||| |||| | || ||| |||||||| Sbjct 962507 GCAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTCTCTCTGACTACAA 962566 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| ||||| | || || || | || ||| | ||||| || ||| Sbjct 962567 CATCCAAAAGGAATCTACCCTCCACTTGGTCTTGAGATTGAGAGGTGGC 962615 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || || || ||||| ||| | || |||||| | Sbjct 961473 AAAATGCAAATTTTCGTCAAGACCTTGACCGGTAAGACCATTACCTTGGAAGTCGAATCT 961532 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| | || || | | | ||||| || || || || | || Sbjct 961533 TCCGACACCATCGACAACGTTAAATCCAAGA-TCCAAGACAAGGAAGGTATTCCACCAGA 961591 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||| || | |||| || || || || |||| |||| | ||| | |||||| Sbjct 961592 CCAGCAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGCAGAACCTTGTCCGACTA 961651 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||||| | || || || | || ||| | ||||| || || Sbjct 961652 CAACATCCAAAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 961702 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || |||||||| | || || ||| | || Sbjct 961932 ATGCAAATCTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCTTCC 961991 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| || || | ||||| || || ||||| | ||||| Sbjct 961992 GACACCATTGACAACG-TCAAATCCAAGATCCAAGACAAGGAAGGTATCCCACCAGACCA 962050 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| || || ||||| |||| |||| | || || |||||||| Sbjct 962051 GCAAAGATTGATCTTTGCCGGTAAACAATTGGAAGACGGTAGAACTCTTTCTGACTACAA 962110 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| ||||| | || || || | || ||| | ||||| || || Sbjct 962111 CATCCAAAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 962158 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || |||||||| | || || ||| | || Sbjct 961704 ATGCAAATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCTTCC 961763 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| ||||| | ||||| || || || || | ||||| Sbjct 961764 GACACCATCGACAACG-TCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCAGACCA 961822 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | || | ||| || || || |||| |||| | || || |||||||| Sbjct 961823 GCAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTACAA 961882 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || || |||| || || | || ||| | ||||| || || Sbjct 961883 CATCCAAAAAGAATCCACCCTTCACTTGGTCTTGAGATTGAGAGGTGG 961930 >seq1 Length=2570408 Score = 105 bits (116), Expect = 7e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || | || || || ||||| ||| | || ||||| || Sbjct 1137443 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTCC 1137384 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | |||||||| || ||||| | ||| Sbjct 1137383 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAAGAAGGTATCCCACCAGAC 1137324 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| || | |||| || || || || |||| || | | ||| | |||||| Sbjct 1137323 CAGCAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGATGGTAGAACCTTGTCTGACTAC 1137264 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 |||||||| |||||| |||| || || | |||||| | ||||| || || || Sbjct 1137263 AACATCCAAAAGGAGTCCACCCTTCACTTGGTGTTGAGATTGAGAGGTGGTGG 1137211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219148478080