Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 seq1 98.7 8e-16 >seq6 Length=1120317 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||||||||||| || ||| | | |||||| Sbjct 961684 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCC 961625 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | |||||| || || || | |||||||| || Sbjct 961624 AATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGG 961565 Query 18237 ATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | | | || | | || | | ||||| | ||| ||| | ||| ||| | || Sbjct 961564 ATCT-TGGATTTAACGTTGTCGATGGTGTCGGAAGATTCGACTTCCAAGGTAATGGTCTT 961506 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||| || || || |||||||||||||| Sbjct 961505 ACCGGTCAAGGTCTTGACGAAAATTTGCATTTT 961473 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| ||||| ||||||||||||| || ||| | | |||||| Sbjct 962368 ACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCC 962309 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | |||||| || || || | |||||||| || | Sbjct 962308 AATTGCTTACCGGCAAAGATTAATCTTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGA 962249 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| |||||| | | | ||||| | ||| ||| | ||| ||| | || Sbjct 962248 ATTTTAGACTTGACGTTGTCGATGGTGTCGGAAGATTCGACTTCCAAGGTAATGGTCTTA 962189 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| || || || || |||||||| Sbjct 962188 CCAGTCAAGGTCTTAACGAAGATTTGCAT 962160 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||||||||| | | ||| ||| |||||| Sbjct 962140 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCC 962081 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 |||||||| || ||| |||| | |||||| || || || | |||||||| || || Sbjct 962080 AATTGTTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGG 962021 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 || | | ||||| | ||| ||||| | || ||| | |||||| | | Sbjct 962020 ATCTTGGAT--TTGACGTTGTCAATGGTGTCGGAAGATTCAACTTCTAAAGTGATGGTCT 961963 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||||||| || || || || |||||||| Sbjct 961962 TACCGGTCAAGGTCTTAACGAAGATTTGCAT 961932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||||||||| ||||||||||| | | ||| | | |||||| Sbjct 961912 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCGTCTTCC 961853 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || || | || | |||||| || || || | |||||||| || Sbjct 961852 AATTGCTTACCAGCGAAAATCAATCTTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGG 961793 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| |||||| | | | ||||| | || ||| | |||||| | || Sbjct 961792 ATTTTAGACTTGACGTTGTCGATGGTGTCGGAAGATTCAACTTCTAAAGTGATGGTCTTA 961733 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || ||||| |||||||| Sbjct 961732 CCGGTCAAAGTCTTGACAAAGATTTGCAT 961704 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| ||||| ||||||||||| | | ||| | | |||||| Sbjct 962596 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTGCCGTCTTCC 962537 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || || |||| | |||||| || || || | |||||||| || Sbjct 962536 AATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGG 962477 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| |||||| | | | ||||| || || ||| | |||||| | || Sbjct 962476 ATTTTAGACTTGACGTTGTCGATGGTGTCGGAGGATTCAACTTCTAAAGTGATGGTCTTA 962417 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || ||||| |||||||| Sbjct 962416 CCGGTCAAAGTCTTGACAAAGATTTGCAT 962388 >seq1 Length=2570408 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || || || ||||| ||||||||||| | || ||| ||| ||||||| Sbjct 1137232 ACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCC 1137291 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | |||||| || || || | ||||| || || Sbjct 1137292 AATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGG 1137351 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | | | ||||| || |||| ||| | ||| ||| | || Sbjct 1137352 ATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTA 1137411 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 1137412 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 1137443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343963013960