Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4 141 9e-29 >seq4 Length=1381050 Score = 141 bits (156), Expect = 9e-29 Identities = 479/734 (65%), Gaps = 18/734 (2%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| || ||||| ||||| ||||| |||||||| || ||||| ||| || || ||| Sbjct 294712 TTTTGGTAATCACTGACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTT 294653 Query 13641 TCCATAAAATCAAATGGATTTATTGACATA--AACACTTTATCACAACCTAGTTCTAATA 13698 ||||| || || ||||| || | ||| | | ||||| || ||| | | | | Sbjct 294652 TCCATGAAGTCGAATGGGTTGGT-GACGTTGTAGAACTTT-TCGTTACCCAAGGCAACCA 294595 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||||| || || | ||||||| ||||| |||| || || |||||||| | | Sbjct 294594 ACAATCTGTCGGCGACGAACTCAACGTATTGGCACATCAAGTCCTTGTTCATACCCAACA 294535 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | || | || ||| || ||||||||||| || || ||||| || | || | Sbjct 294534 AGCTGCATGGCAAAGCATCGGTGAAGAATTCTTTTTCGATGGAAACAGCTTCGGTAATGA 294475 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA--CACGC 13876 | || || ||| || | | | |||| | || | || | | || || Sbjct 294474 TCTTTTCAACAATGG--TTGGGTTTGGTCTGTTTTGCAAGTGGGAGAACAACAAGCAGGC 294417 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||| || || | || || || | || || | ||||| || || || || || || Sbjct 294416 AAAGTCGGTGTGCAAACCTTCGTCACGACAGATCAACTCGTTGGAGAAAGTCAAGCCAGG 294357 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 |||| |||| || || ||||| || || | |||||| || || || ||||| || || Sbjct 294356 CATCTTACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAGGAACCAGAGAAGAAAATACC 294297 Query 13997 CTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14056 || || || ||||| || | |||| ||| || ||| | || | | || ||||| Sbjct 294296 TTCGACGGCGGCAAAGGCAACCAATCTTTCACCGAACAAAGCGTCGTCGTCACTAATCCA 294237 Query 14057 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | | |||||| || | || || || || | || | || || || || || || Sbjct 294236 TCTCAAAGCCCAGTCGGCCTTCTTCTTGATGCATGGGATGTTGTCGATGGCGTTGAACAA 294177 Query 14117 ATATTC--CTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14173 | || |||| |||| | | ||||| |||| || ||||| | ||| || |||| Sbjct 294176 GAAGTCAGCTTC-CTTTGGATCCTTGA--TGTAGGTGTCAATCAATAACGAGTAAGTTTC 294120 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGACCAT 14231 ||||| ||||||||||| || || ||||| || || ||| | ||||| |||| Sbjct 294119 GGAGTGGATGTTTTCCATCATGATTTGGAAACCGTAGAAACATTTGGCTTCAGTGACC-- 294062 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || ||||| ||| | || ||||| |||| ||||| || || ||||||||| || ||| Sbjct 294061 TGCACTTCAGAGGAGAAGTTTTCGACCAAGTTTTCGTTGACGATACCATCAGAGGCAGCA 294002 Query 14292 AAAAATGCCAATAT 14305 || || ||||| || Sbjct 294001 AAGAAGGCCAAGAT 293988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727952027200