Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03-
01] 8 sequences; 12,176,763 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq4 138 1e-27
seq6 96.9 4e-15
seq1 86.0 6e-12
>seq4
Length=1381050
Score = 138 bits (152), Expect = 1e-27
Identities = 332/489 (68%), Gaps = 19/489 (4%)
Strand=Plus/Plus
Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACTTTGGCCGAACG 50417
|| |||| ||| ||||| |||| ||||| || || | | ||| || || ||| |
Sbjct 294213 AAGAAGGCCGACTGGGCTTTGAGATGGATTAGTGACGACGACGCTTTGTTCGGT-GAAAG 294271
Query 50418 TTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATT 50477
|| || || |||||| || |||||| | || || || ||| |||||| | || ||
Sbjct 294272 ATTGGTTGCCTTTGCCGCCGTCGAAGGTATTTTCTTCTCTGGTTCCTTTGCTTCTATCTT 294331
Query 50478 TTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCG 50537
| | || | ||| | ||||| ||| | || || |||||||||||| | ||
Sbjct 294332 CTGGTTGAAGAAGAGAGGTAAGATGCCTGGCTTGACTTTCTCCAACGAGTTGATCTGTCG 294391
Query 50538 CGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAA 50597
|||||||| ||||||| |||||||| || |||| | | | | | | | |||
Sbjct 294392 TGACGAAGGTTTGCACACCGACTTTGCCTGCTTGTTGTTCT---CCCACTTGCA---AAA 294445
Query 50598 ATTATCATACGAAACAATTTTGGACATGTTCAAA---GAAGCCGTCGACATCGAAAAAGA 50654
| || || ||| ||| | || | | ||| ||||| || ||||||||||||
Sbjct 294446 CAGACCAAACCCAACCATTGTTGAAAAGATCATTACCGAAGCTGTTTCCATCGAAAAAGA 294505
Query 50655 GTTTTTCACGGACGCTTTACC-CGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCG 50713
|| ||||| || ||||| || | || |||||||| |||||| ||| ||||||||
Sbjct 294506 ATTCTTCACCGATGCTTTGCCATGCAGC-TTGTTGGGTATGAACAAGGACTTGATGTGCC 294564
Query 50714 AGTACATTGAGTTTGTTGCAGACAGATTGTT-GTTGCAGCTGGGACAACCGAAA-TACTA 50771
| ||| ||||||| || || ||||||||||| ||||| || || ||| ||| | |||
Sbjct 294565 AATACGTTGAGTTCGTCGCCGACAGATTGTTGGTTGC--CTTGGGTAACGAAAAGTTCTA 294622
Query 50772 TAATG-CACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACT 50830
|| | ||| ||||| || || ||| | ||||| || |||| || || || ||||
Sbjct 294623 CAACGTCAC-CAACCCATTCGACTTCATGGAAAACATCTCCTTGGCTGGTAAGACCAACT 294681
Query 50831 TTTTCGAAA 50839
| |||||||
Sbjct 294682 TCTTCGAAA 294690
>seq6
Length=1120317
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| || | ||| || || |||| || ||||||||||| |||||||| ||
Sbjct 961930 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 961871
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || |||||| | ||| |||||||| | |||| | |||||| || || ||
Sbjct 961870 AGAGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGCTGGTCTGGTGGA 961811
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| ||||| || | | || | ||||| | | ||| |||
Sbjct 961810 ATACCTTCCTTGTCTTGGATTTTAGACTTGACGTTGTCGATGGTGTCGGAAGATTCAACT 961751
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | ||||| |||||||| || || || || |||||||||
Sbjct 961750 TCTAAAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATTTGCATA 961703
>seq1
Length=2570408
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| || | ||| || || |||| || || || ||||| |||||||| || |
Sbjct 1137214 CCACCTCTCAATCTCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1137273
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || ||||| | ||| ||||| ||| |||||| | |||||| || || ||
Sbjct 1137274 AAGGTTCTACCATCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGG 1137333
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| || || || | | || | ||||| | || || |||
Sbjct 1137334 ATACCTTCTTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACT 1137393
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||||| ||||| || || || ||||| ||||||||
Sbjct 1137394 TCCAAGGTAATGGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 1137440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507014349298560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |