Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 seq6 96.9 4e-15 seq1 86.0 6e-12 >seq4 Length=1381050 Score = 138 bits (152), Expect = 1e-27 Identities = 332/489 (68%), Gaps = 19/489 (4%) Strand=Plus/Plus Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACTTTGGCCGAACG 50417 || |||| ||| ||||| |||| ||||| || || | | ||| || || ||| | Sbjct 294213 AAGAAGGCCGACTGGGCTTTGAGATGGATTAGTGACGACGACGCTTTGTTCGGT-GAAAG 294271 Query 50418 TTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATT 50477 || || || |||||| || |||||| | || || || ||| |||||| | || || Sbjct 294272 ATTGGTTGCCTTTGCCGCCGTCGAAGGTATTTTCTTCTCTGGTTCCTTTGCTTCTATCTT 294331 Query 50478 TTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCG 50537 | | || | ||| | ||||| ||| | || || |||||||||||| | || Sbjct 294332 CTGGTTGAAGAAGAGAGGTAAGATGCCTGGCTTGACTTTCTCCAACGAGTTGATCTGTCG 294391 Query 50538 CGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAA 50597 |||||||| ||||||| |||||||| || |||| | | | | | | | ||| Sbjct 294392 TGACGAAGGTTTGCACACCGACTTTGCCTGCTTGTTGTTCT---CCCACTTGCA---AAA 294445 Query 50598 ATTATCATACGAAACAATTTTGGACATGTTCAAA---GAAGCCGTCGACATCGAAAAAGA 50654 | || || ||| ||| | || | | ||| ||||| || |||||||||||| Sbjct 294446 CAGACCAAACCCAACCATTGTTGAAAAGATCATTACCGAAGCTGTTTCCATCGAAAAAGA 294505 Query 50655 GTTTTTCACGGACGCTTTACC-CGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCG 50713 || ||||| || ||||| || | || |||||||| |||||| ||| |||||||| Sbjct 294506 ATTCTTCACCGATGCTTTGCCATGCAGC-TTGTTGGGTATGAACAAGGACTTGATGTGCC 294564 Query 50714 AGTACATTGAGTTTGTTGCAGACAGATTGTT-GTTGCAGCTGGGACAACCGAAA-TACTA 50771 | ||| ||||||| || || ||||||||||| ||||| || || ||| ||| | ||| Sbjct 294565 AATACGTTGAGTTCGTCGCCGACAGATTGTTGGTTGC--CTTGGGTAACGAAAAGTTCTA 294622 Query 50772 TAATG-CACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACT 50830 || | ||| ||||| || || ||| | ||||| || |||| || || || |||| Sbjct 294623 CAACGTCAC-CAACCCATTCGACTTCATGGAAAACATCTCCTTGGCTGGTAAGACCAACT 294681 Query 50831 TTTTCGAAA 50839 | ||||||| Sbjct 294682 TCTTCGAAA 294690 >seq6 Length=1120317 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || |||| || ||||||||||| |||||||| || Sbjct 961930 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 961871 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||| |||||||| | |||| | |||||| || || || Sbjct 961870 AGAGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGCTGGTCTGGTGGA 961811 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| || | | || | ||||| | | ||| ||| Sbjct 961810 ATACCTTCCTTGTCTTGGATTTTAGACTTGACGTTGTCGATGGTGTCGGAAGATTCAACT 961751 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| |||||||| || || || || ||||||||| Sbjct 961750 TCTAAAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATTTGCATA 961703 >seq1 Length=2570408 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || |||| || || || ||||| |||||||| || | Sbjct 1137214 CCACCTCTCAATCTCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1137273 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||| ||| |||||| | |||||| || || || Sbjct 1137274 AAGGTTCTACCATCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGG 1137333 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | || | ||||| | || || ||| Sbjct 1137334 ATACCTTCTTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACT 1137393 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| ||||| || || || ||||| |||||||| Sbjct 1137394 TCCAAGGTAATGGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 1137440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014349298560