Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4 172 5e-38 >seq4 Length=1381050 Score = 172 bits (190), Expect = 5e-38 Identities = 544/838 (65%), Gaps = 4/838 (0%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || || || ||||| ||||| || ||||| || || || | || || || ||| Sbjct 294712 TTTTGGTAATCACTGACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTT 294653 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || ||||| || || | ||| | |||| || || | | ||| Sbjct 294652 TCCATGAAGTCGAATGGGTTGGTGACGTTGTAGAACTTTTCGTTACCCAAGGCAACCAAC 294593 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 |||||||| || || ||||| | ||| || ||| || || |||||| || | || Sbjct 294592 AATCTGTCGGCGACGAACTCAACGTATTGGCACATCAAGTCCTTGTTCATACCCAACAAG 294533 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATG 13099 | |||| ||| || || || || | |||||| || ||| |||||| ||| || Sbjct 294532 CTGCATGGCAAAGCATCGGTGAAGAATTCTTTTTCGATGGAAACAGCTTCGGTAATGATC 294473 Query 13100 TCTCTTATTACGTTCTCTAATGGAG-GATTTGATAGATGCTTAAACATCATACATGCAAA 13158 | | | | | | ||| | |||| || || |||| || || ||||| Sbjct 294472 TTTTCAACAATGGTTGGGTTTGGTCTGTTTTGCAAG-TGGGAGAACAACAAGCAGGCAAA 294414 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 || |||||| ||||| || | || || | |||||| || || || | || ||||| Sbjct 294413 GTCGGTGTGCAAACCTTCGTCACGACAGATCAACTCGTTGGAGAAAGTCAAGCCAGGCAT 294354 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 |||| || || | ||| || |||| |||||| ||||| || || || || ||||| Sbjct 294353 CTTACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAGGAACCAGAGAAGAAAATACCTTC 294294 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTA-TCCACT 13337 || || ||||| || | ||| |||||||| || | | | || ||| |||| Sbjct 294293 GACGGCGGCAAAGGCAACCAATCTTTCACCGAACAAAGCGTCGTCG-TCACTAATCCATC 294235 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 | ||||||| || || | || | ||| || || || || ||||| || || Sbjct 294234 TCAAAGCCCAGTCGGCCTTCTTCTTGATGCATGGGATGTTGTCGATGGCGTTGAACAAGA 294175 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 | | |||||| || || || || || |||||||| || |||| || | Sbjct 294174 AGTCAGCTTCCTTTGGATCCTTGATGTAGGTGTCAATCAATAACGAGTAAGTTTCGGAGT 294115 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517 | || ||||||||| ||||||||||| || |||||| | || || | ||||| |||| Sbjct 294114 GGATGTTTTCCATCATGATTTGGAAACCGTAGAAACATTTGGCTTCAGTGACCTGCACTT 294055 Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 | ||| | || |||| | ||||||||||| || || || ||| |||||||| || | Sbjct 294054 CAGAGGAGAAGTTTTCGACCAAGTTTTCGTTGACGATACCATCAGAGGCAGCAAAGAAGG 293995 Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAAT 13637 | | || ||| || | ||||||| || | ||| | ||| ||| | | Sbjct 293994 CCAAGATTCTAGAAATGAAGAATCTTTCGTTGTCGGTCAAGCTGTTCCAGTCTTGGGTGT 293935 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 |||| || || | ||| || ||||||| |||||||| |||| ||||| ||||| Sbjct 293934 CTTTACTCAAGTCGAGCTCTTCGGCGGTCCAGAAAGAAGCTTCAGCTTTCTTGTACAT 293877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982357979216