Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 165 2e-35 seq6 125 2e-23 >seq4 Length=1381050 Score = 165 bits (182), Expect = 2e-35 Identities = 381/563 (68%), Gaps = 21/563 (4%) Strand=Plus/Plus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 |||||||| | || | |||||||| ||||| | ||||| | || || | | ||| Sbjct 293877 ATGTACAAGAAAGCTGAAGCTTCTTTCTGGACCGCCGAAGAGCTCGACTTGAGTAAAGAC 293936 Query 268802 TTAATAGATTGGAAAAATTTAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCTTG- 268859 ||| ||||| | || | | | || |||||| || || ||| | | ||||| Sbjct 293937 ACCCAAGACTGGAACAGCTTGAC-CGACAACGAAAGATTCTTCATTTCT-AGAATCTTGG 293994 Query 268860 CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAG 268919 | || ||||| | |||||||||||| |||||||| | || || || |||| | Sbjct 293995 CCTTCTTTGCTGCCTCTGATGGTATCGTCAACGAAAACTTGGTCGAAAACTTCTCCTCTG 294054 Query 268920 AGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTC 268979 | || ||| | ||||||||| |||||| ||||| ||||| || || ||||| || | Sbjct 294055 AAGTGCAGGTCACTGAAGCCAAATGTTTCTACGGTTTCCAAATCATGATGGAAAACATCC 294114 Query 268980 ATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA 269039 | || || | ||| |||| || || || || || | ||| | ||| ||| Sbjct 294115 ACTCCGAAACTTACTCGTTATTGATTGACACCTACATCAAGGAT-----CCAAAGGAAGC 294169 Query 269040 -GACTATTTTCTTCTATG------AGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092 |||| | || ||| | | | ||| || || | | || || | || ||| Sbjct 294170 TGACT-TCTTGTTCAACGCCATCGACAAC-ATCCCATGCATCAAGAAGAAGGCCGACTGG 294227 Query 269093 GCTCTGAAATGGATAAACGATAGCG-CGCCTTA--CGGAGAAAGGTTAGTTGCTTTTGCC 269149 ||| ||| |||||| | || || ||| || ||| ||||| || ||||| |||||| Sbjct 294228 GCTTTGAGATGGATTAGTGACGACGACGCTTTGTTCGGTGAAAGATTGGTTGCCTTTGCC 294287 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 || || |||||||| ||||| || || || ||||| ||||||| ||||||||||| ||| Sbjct 294288 GCCGTCGAAGGTATTTTCTTCTCTGGTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGA 294347 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 || ||||| || || |||||||| ||||| ||||| | | ||||||||||| ||| Sbjct 294348 GGTAAGATGCCTGGCTTGACTTTCTCCAACGAGTTGATCTGTCGTGACGAAGGTTTGCAC 294407 Query 269270 TGCGACTTCGCTTGTTTATTATT 269292 |||||| || || || || || Sbjct 294408 ACCGACTTTGCCTGCTTGTTGTT 294430 >seq6 Length=1120317 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || |||||||| ||||||||||||||||| | |||||| || Sbjct 962128 GTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCGTCTTCCAATTGTTTACCG 962069 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || || || || || || || ||||| || || || ||||| | ||| Sbjct 962068 GCAAAGATCAATCTTTGCTGGTCTGGTGGGATACCTTCCTTGTCTTGGATCTTGGATTTG 962009 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| || ||| || |||| || || |||||||| || | || Sbjct 962008 ACGTTGTCAATGGTGTCGGAAGATTCAACTTCTAAAGTGATGGTCTTACCGGTCAAGGTC 961949 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 961948 TTAACGAAGATTTGCAT 961932 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || ||||| || | ||||| |||||||| | ||| || || Sbjct 962356 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCCAATTGCTTACCG 962297 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||| || || || || || || || ||||| || || ||||| || | || Sbjct 962296 GCAAAGATTAATCTTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGACTTG 962237 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| || ||| || || | ||||| ||||||||||| | || Sbjct 962236 ACGTTGTCGATGGTGTCGGAAGATTCGACTTCCAAGGTAATGGTCTTACCAGTCAAGGTC 962177 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 962176 TTAACGAAGATTTGCAT 962160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398281981664