Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 154 1e-32 seq1 125 6e-24 >seq6 Length=1120317 Score = 154 bits (170), Expect = 1e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||||| ||| |||||||| | ||| ||||||||||| | ||| | Sbjct 962394 TTTGCATACCACCTCTCAATCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGT 962335 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || || || || |||| || || ||| ||||||||||||||||||| | Sbjct 962334 AGTCGGACAAGGTTCTGCCGTCTTCCAATTGCTTACCGGCAAAGATTAATCTTTGCTGGT 962275 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||||||||| ||||| | |||||| | ||||||| | ||| ||||| | Sbjct 962274 CTGGTGGAATACCTTCCTTGTCTTGAATTTTAGACTTGACGTTGTCGATGGTGTCGGAAG 962215 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | || ||||| || ||||| | || || || ||||| ||||| Sbjct 962214 ATTCGACTTCCAAGGTAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 962160 Score = 141 bits (156), Expect = 8e-29 Identities = 178/243 (73%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 94766 TTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTG 94824 ||||||| |||| || |||||||||| ||| |||||||| | |||||||||||||| Sbjct 962630 TTAAAATATTTATTGGCCACCTCTCAATCTCAAGACCAAGTGGAGGGTAGATTCCTTTTG 962571 Query 94825 CACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884 | ||| || || | ||| || || |||| || || || | ||||| ||||| Sbjct 962570 GATGTTGTAGTCAGAGAGAGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCT 962511 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 |||||| ||||| ||||||||||| ||||| | ||||| | ||||||| | ||| || Sbjct 962510 TTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACGTTGTCGATGGT 962451 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||| | | || || || | |||||||| || || || | ||| || |||||||| || Sbjct 962450 GTCGGAGGATTCAACTTCTAAAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATTTG 962391 Query 95005 CAT 95007 ||| Sbjct 962390 CAT 962388 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||||| ||| |||||||| | ||||||||||||||| | ||| | Sbjct 961710 TTTGCATACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGT 961651 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || || || || |||| || || ||| ||||||| ||||||||||| | Sbjct 961650 AGTCGGACAAGGTTCTGCCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGT 961591 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||||||||| ||||| | || || | || ||| | ||| ||||| | Sbjct 961590 CTGGTGGAATACCTTCCTTGTCTTGGATCTTGGATTTAACGTTGTCGATGGTGTCGGAAG 961531 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | || ||||| || || || | || || || || || ||||| Sbjct 961530 ATTCGACTTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTGACGAAAATTTGCAT 961476 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||||| ||| |||||||| | || ||||| ||||| | ||| | Sbjct 961938 TTTGCATACCACCTCTCAATCTCAAGACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGT 961879 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| || || |||| || || || | || || ||||||||||| | Sbjct 961878 AGTCAGAAAGAGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGCTGGT 961819 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||||||||| ||||| | ||||| | ||||||| | ||| ||||| | Sbjct 961818 CTGGTGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACGTTGTCGATGGTGTCGGAAG 961759 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| || || || | ||| || |||||||| ||||| Sbjct 961758 ATTCAACTTCTAAAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 961704 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||||| ||| |||||||| | ||||||||||||||| | ||| | Sbjct 962166 TTTGCATACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGT 962107 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | || |||| ||||| ||| ||||||| ||||||||||| | Sbjct 962106 AGTCAGAAAGAGTTCTACCGTCTTCCAATTGTTTACCGGCAAAGATCAATCTTTGCTGGT 962047 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || |||||||| ||||| | || || | |||||| | | | ||||| | Sbjct 962046 CTGGTGGGATACCTTCCTTGTCTTGGATCTTGGATTTGACGTTGTCAATGGTGTCGGAAG 961987 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| || || || | || || || ||||| ||||| Sbjct 961986 ATTCAACTTCTAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 961932 >seq1 Length=2570408 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| |||||||||||| | || || |||||||| | ||| || || | Sbjct 1137214 CCACCTCTCAATCTCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1137273 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||| || || ||| ||||||| ||||||||||| ||||| || Sbjct 1137274 AAGGTTCTACCATCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGG 1137333 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||||||||| | || || | |||||| | ||| ||||| | | ||||| Sbjct 1137334 ATACCTTCTTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACT 1137393 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || || || | ||| || || || || ||||| Sbjct 1137394 TCCAAGGTAATGGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 1137440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291155170880