Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 131 1e-25 seq1 129 5e-25 >seq6 Length=1120317 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||||||||| ||||||| | ||||| || || || Sbjct 961704 ATGCAAATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCTTCC 961763 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||| ||||| |||||||| ||||| Sbjct 961764 GACACCATCGACAACGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAG 961823 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||| || || || ||||| ||||| | | ||| | || ||||| Sbjct 961824 CAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTACAAC 961883 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || || || || | || | ||||| || Sbjct 961884 ATCCAAAAAGAATCCACCCTTCACTTGGTCTTGAGATTGAGAGGTGG 961930 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||||||||| ||||||| | ||||| || || || Sbjct 962388 ATGCAAATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCCTCC 962447 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||| ||||| |||||||| ||||| Sbjct 962448 GACACCATCGACAACGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAG 962507 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || || || || ||||| ||||| | | ||| | || ||||| Sbjct 962508 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTCTCTCTGACTACAAC 962567 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || || || || | || | ||||| || Sbjct 962568 ATCCAAAAGGAATCTACCCTCCACTTGGTCTTGAGATTGAGAGGTGG 962614 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||||||||| |||| || | ||||| || || || Sbjct 961475 AATGCAAATTTTCGTCAAGACCTTGACCGGTAAGACCATTACCTTGGAAGTCGAATCTTC 961534 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || || ||| ||||| ||||| |||||||| ||||| Sbjct 961535 CGACACCATCGACAACGTTAAATCCAAGATCCAAGACAAGGAAGGTATTCCACCAGACCA 961594 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || |||||||| || ||||| ||||| | | || || ||| ||||| Sbjct 961595 GCAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGCAGAACCTTGTCCGACTACAA 961654 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || || || || || | || | ||||| || Sbjct 961655 CATCCAAAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 961702 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||||||| ||||||| | ||||| || || || Sbjct 961932 ATGCAAATCTTCGTTAAGACCTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCTTCC 961991 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| || | || ||| ||||| ||||| || ||||| || Sbjct 961992 GACACCATTGACAACGTCA---AATC-CAAGATCCAAGACAAGGAAGGTATCCCACCAGA 962047 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || | | || |||||||| |||||||| ||||| | | | ||| | || || Sbjct 962048 CCAGCAAAGATTGATCTTTGCCGGTAAACAATTGGAAGACGGTAGAACTCTTTCTGACTA 962107 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| ||||| || || || || || | || | ||||| || Sbjct 962108 CAACATCCAAAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 962158 >seq1 Length=2570408 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||| |||||||| |||| || | ||||| ||||| || Sbjct 1137440 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTCCTCC 1137381 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||||||||| || ||||| |||| Sbjct 1137380 GACACCATCGA--CAATGTCAAGTCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACC 1137323 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || |||||||| || ||||| ||||||| | | || || || |||| Sbjct 1137322 AGCAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGATGGTAGAACCTTGTCTGACTACA 1137263 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| || ||||| || || || ||| | || | ||||| || Sbjct 1137262 ACATCCAAAAGGAGTCCACCCTTCACTTGGTGTTGAGATTGAGAGGTGG 1137214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327957750520