Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 214 2e-50 >seq4 Length=1381050 Score = 214 bits (236), Expect = 2e-50 Identities = 428/632 (68%), Gaps = 2/632 (0%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| ||| || ||||| || || | || ||||| | || ||||| || || || Sbjct 294430 AACAACAAGCAGGCAAAGTCGGTGTGCAAACCTTCGTCACGACAGATCAACTCGTTGGAG 294371 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || || ||||||||| ||||| || || |||||||| ||||||||||| || ||| Sbjct 294370 AAAGTCAAGCCAGGCATCTTACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAGGAACCA 294311 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || ||||| |||||||| || || ||||| ||||| | |||||| || | ||| || Sbjct 294310 GAGAAGAAAATACCTTCGACGGCGGCAAAGGCAACCAATCTTTCACCGAACAAAGCGTCG 294251 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | | | ||||||| ||| ||||| || |||||||| || | ||||| || | || Sbjct 294250 TCGTCACTAATCCATCTCAAAGCCCAGTCGGCCTTCTTCTTGATGCATGGGATGTTGTCG 294191 Query 19192 ATAGAATTAAATAGATACATACGC-TCATCTGTATCTTTAACATATGCATCTATCAATAA 19250 || | || || | | | | || || | || ||| || | || | || |||||||| Sbjct 294190 ATGGCGTTGAACA-AGAAGTCAGCTTCCTTTGGATCCTTGATGTAGGTGTCAATCAATAA 294132 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 ||| |||| || || || ||||| || || || || ||||| |||||| | || Sbjct 294131 CGAGTAAGTTTCGGAGTGGATGTTTTCCATCATGATTTGGAAACCGTAGAAACATTTGGC 294072 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370 ||| || | ||| |||||| | || |||||||||| ||||| || || || ||||| Sbjct 294071 TTCAGTGACCTGCACTTCAGAGGAGAAGTTTTCGACCAAGTTTTCGTTGACGATACCATC 294012 Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT 19430 | || ||||| || || || | ||| || | |||| | ||| || | Sbjct 294011 AGAGGCAGCAAAGAAGGCCAAGATTCTAGAAATGAAGAATCTTTCGTTGTCGGTCAAGCT 293952 Query 19431 ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490 ||||| || | | |||||| || || | ||||| | ||||| |||||||| || Sbjct 293951 GTTCCAGTCTTGGGTGTCTTTACTCAAGTCGAGCTCTTCGGCGGTCCAGAAAGAAGCTTC 293892 Query 19491 TGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATT 19550 ||||| || ||||| | ||| || || | ||| | ||| || || || | | | | Sbjct 293891 AGCTTTCTTGTACATTTGCCAGATCTCGTGGTATCTGAGAGGGAAGATCACGTAACGACT 293832 Query 19551 TTTATTTTCTTTAAGAATAGGTTCCATTTTTT 19582 ||||||||||| | |||||| ||||| Sbjct 293831 AGGGTTTTCTTTAAGCAAAGGTTCGTCTTTTT 293800 Score = 149 bits (164), Expect = 7e-31 Identities = 590/918 (64%), Gaps = 20/918 (2%) Strand=Plus/Plus Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA--GCACATAGATTAC 47952 ||||| ||||| || || | |||| || ||||| | |||||| ||||| || || Sbjct 121248 TTACAAACAGCAACTTCTTCTGGAGAAGAATATTCAACAATTTCACAGCACA-AG-TTGG 121305 Query 47953 CACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAA 48012 | | ||||| ||||||| || | || || | |||||||| || || ||||| | Sbjct 121306 AAGACTTGATGATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAAGCATCTTTGTACA 121365 Query 48013 GCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAG 48072 ||| || || || || ||||| | || | ||| | ||| || | ||| | | | Sbjct 121366 ACATGAATGGAGTACCGGTTTCGGTTTGTGCTTCCAAGATGGAGTACCACAATTTTTGTG 121425 Query 48073 CCTTTATAACAGCT---CTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAA 48129 |||| ||||| | || || | || || ||||||| | || || | || | Sbjct 121426 CCTT---AACAGTTTGTCTGCCTCTGTTTTCTCTTTCGTATCTTTCGTACAATTGTTCGA 121482 Query 48130 ATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAAT 48189 |||| || || || |||| | | || |||||| || |||||| | | | | ||| Sbjct 121483 ATTCGTCACCGTAAACATCAGCCAAGCCAGGAGCCTCGTTAGGAGAGAAAAGGGTCCA-- 121540 Query 48190 CCTCATCATTTTTT---ACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATA 48246 |||| | |||| | || | |||| || | ||| || |||||||| ||| || | Sbjct 121541 -CTCACCGTTTTGTTCAACACGCTTCATGAAAAGATCAGGAATCCAAAGGGCTGGGAAAA 121599 Query 48247 AATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTA 48306 ||| || | ||| | |||||| || || |||| || | | || | || || | | Sbjct 121600 GATCTCTTGCTCTGATTTCTTCTTTACCGTGATTCTTTCTGATGTCGATGAAATCAAAGA 121659 Query 48307 TATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTT 48366 | || | ||||| ||||| || || | || | |||| |||| || ||||| |||| Sbjct 121660 TGTCCGAGTGCCAAGGTTCCAAGTACAAGGCGAAAGCACCAGGTCTCTTGTTACCACCTT 121719 Query 48367 GATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATA 48426 | || | || | |||||| ||||| | || | | ||| |||| ||||| || || Sbjct 121720 GGTCAACGTAACGGGCAGTGTTGTTGAACACACGGACCATAGGGATGATACCGTTGGAGG 121779 Query 48427 TACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCT 48485 |||| ||||| || | ||| ||| ||| || | || || || || || ||| Sbjct 121780 TACCGTTGGTACCAGCAATGTAAGCACCAGTACTACGGATGTTGTGGATGTGCAA-ACCA 121838 Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545 |||||||| || || || || | |||||| ||| | || || || || || || Sbjct 121839 ATACCACCGGCAGACTTGGAGATCAAAGCACAAGTTTTCAAAGTGTCGTAGATACCGTCG 121898 Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCT 48605 || || ||| |||| | || |||||| |||||||| ||| | ||| || Sbjct 121899 ATCGAGTCTTCTTTCATGGCGACAAGGAAACAAGACGACATTTGAGGAGCAGGAGTACCG 121958 Query 48606 GAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTT 48665 | || || | || || || | ||| | || | | | || | | || || || Sbjct 121959 GCGTTGAAAAGAGTAGGGGACCCGTGAGTGAAGTGTCTTTGAGACATGAGGTTGTAAGTC 122018 Query 48666 TCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAACATATA 48724 ||||||||| || || || || | || ||||| | || || | ||| | || | Sbjct 122019 TCAATAACACGTTCGATGTCGTCACCG-TGGATACCAACAGCGACTCTCATGATCAAGTG 122077 Query 48725 TTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTT 48784 |||||||||||| | | |||| || ||| |||| | || ||| ||||||| || || Sbjct 122078 CTGAGGTCTTTCAGCGACTTTGCCGTTGATTCTCAACAAGTAAGATCTTTCCAAAGTCTT 122137 Query 48785 AAAACCAAAATAGTTGTA 48802 ||||| || |||||||| Sbjct 122138 GAAACCGAAGTAGTTGTA 122155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108743789120