Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03-
01] 8 sequences; 12,176,763 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4 214 2e-50
>seq4
Length=1381050
Score = 214 bits (236), Expect = 2e-50
Identities = 428/632 (68%), Gaps = 2/632 (0%)
Strand=Plus/Minus
Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011
|||| ||| || ||||| || || | || ||||| | || ||||| || || ||
Sbjct 294430 AACAACAAGCAGGCAAAGTCGGTGTGCAAACCTTCGTCACGACAGATCAACTCGTTGGAG 294371
Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071
|| || || ||||||||| ||||| || || |||||||| ||||||||||| || |||
Sbjct 294370 AAAGTCAAGCCAGGCATCTTACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAGGAACCA 294311
Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131
|| ||||| |||||||| || || ||||| ||||| | |||||| || | ||| ||
Sbjct 294310 GAGAAGAAAATACCTTCGACGGCGGCAAAGGCAACCAATCTTTCACCGAACAAAGCGTCG 294251
Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191
| | | ||||||| ||| ||||| || |||||||| || | ||||| || | ||
Sbjct 294250 TCGTCACTAATCCATCTCAAAGCCCAGTCGGCCTTCTTCTTGATGCATGGGATGTTGTCG 294191
Query 19192 ATAGAATTAAATAGATACATACGC-TCATCTGTATCTTTAACATATGCATCTATCAATAA 19250
|| | || || | | | | || || | || ||| || | || | || ||||||||
Sbjct 294190 ATGGCGTTGAACA-AGAAGTCAGCTTCCTTTGGATCCTTGATGTAGGTGTCAATCAATAA 294132
Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310
||| |||| || || || ||||| || || || || ||||| |||||| | ||
Sbjct 294131 CGAGTAAGTTTCGGAGTGGATGTTTTCCATCATGATTTGGAAACCGTAGAAACATTTGGC 294072
Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370
||| || | ||| |||||| | || |||||||||| ||||| || || || |||||
Sbjct 294071 TTCAGTGACCTGCACTTCAGAGGAGAAGTTTTCGACCAAGTTTTCGTTGACGATACCATC 294012
Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGT 19430
| || ||||| || || || | ||| || | |||| | ||| || |
Sbjct 294011 AGAGGCAGCAAAGAAGGCCAAGATTCTAGAAATGAAGAATCTTTCGTTGTCGGTCAAGCT 293952
Query 19431 ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490
||||| || | | |||||| || || | ||||| | ||||| |||||||| ||
Sbjct 293951 GTTCCAGTCTTGGGTGTCTTTACTCAAGTCGAGCTCTTCGGCGGTCCAGAAAGAAGCTTC 293892
Query 19491 TGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATT 19550
||||| || ||||| | ||| || || | ||| | ||| || || || | | | |
Sbjct 293891 AGCTTTCTTGTACATTTGCCAGATCTCGTGGTATCTGAGAGGGAAGATCACGTAACGACT 293832
Query 19551 TTTATTTTCTTTAAGAATAGGTTCCATTTTTT 19582
||||||||||| | |||||| |||||
Sbjct 293831 AGGGTTTTCTTTAAGCAAAGGTTCGTCTTTTT 293800
Score = 149 bits (164), Expect = 7e-31
Identities = 590/918 (64%), Gaps = 20/918 (2%)
Strand=Plus/Plus
Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCA--GCACATAGATTAC 47952
||||| ||||| || || | |||| || ||||| | |||||| ||||| || ||
Sbjct 121248 TTACAAACAGCAACTTCTTCTGGAGAAGAATATTCAACAATTTCACAGCACA-AG-TTGG 121305
Query 47953 CACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAA 48012
| | ||||| ||||||| || | || || | |||||||| || || ||||| |
Sbjct 121306 AAGACTTGATGATACCCAAGTTCTTTTGGTTGGTCTTCTTGTTACAAGCATCTTTGTACA 121365
Query 48013 GCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAG 48072
||| || || || || ||||| | || | ||| | ||| || | ||| | | |
Sbjct 121366 ACATGAATGGAGTACCGGTTTCGGTTTGTGCTTCCAAGATGGAGTACCACAATTTTTGTG 121425
Query 48073 CCTTTATAACAGCT---CTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAA 48129
|||| ||||| | || || | || || ||||||| | || || | || |
Sbjct 121426 CCTT---AACAGTTTGTCTGCCTCTGTTTTCTCTTTCGTATCTTTCGTACAATTGTTCGA 121482
Query 48130 ATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAAT 48189
|||| || || || |||| | | || |||||| || |||||| | | | | |||
Sbjct 121483 ATTCGTCACCGTAAACATCAGCCAAGCCAGGAGCCTCGTTAGGAGAGAAAAGGGTCCA-- 121540
Query 48190 CCTCATCATTTTTT---ACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATA 48246
|||| | |||| | || | |||| || | ||| || |||||||| ||| || |
Sbjct 121541 -CTCACCGTTTTGTTCAACACGCTTCATGAAAAGATCAGGAATCCAAAGGGCTGGGAAAA 121599
Query 48247 AATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTA 48306
||| || | ||| | |||||| || || |||| || | | || | || || | |
Sbjct 121600 GATCTCTTGCTCTGATTTCTTCTTTACCGTGATTCTTTCTGATGTCGATGAAATCAAAGA 121659
Query 48307 TATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTT 48366
| || | ||||| ||||| || || | || | |||| |||| || ||||| ||||
Sbjct 121660 TGTCCGAGTGCCAAGGTTCCAAGTACAAGGCGAAAGCACCAGGTCTCTTGTTACCACCTT 121719
Query 48367 GATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATA 48426
| || | || | |||||| ||||| | || | | ||| |||| ||||| || ||
Sbjct 121720 GGTCAACGTAACGGGCAGTGTTGTTGAACACACGGACCATAGGGATGATACCGTTGGAGG 121779
Query 48427 TACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCT 48485
|||| ||||| || | ||| ||| ||| || | || || || || || |||
Sbjct 121780 TACCGTTGGTACCAGCAATGTAAGCACCAGTACTACGGATGTTGTGGATGTGCAA-ACCA 121838
Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545
|||||||| || || || || | |||||| ||| | || || || || || ||
Sbjct 121839 ATACCACCGGCAGACTTGGAGATCAAAGCACAAGTTTTCAAAGTGTCGTAGATACCGTCG 121898
Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCT 48605
|| || ||| |||| | || |||||| |||||||| ||| | ||| ||
Sbjct 121899 ATCGAGTCTTCTTTCATGGCGACAAGGAAACAAGACGACATTTGAGGAGCAGGAGTACCG 121958
Query 48606 GAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTT 48665
| || || | || || || | ||| | || | | | || | | || || ||
Sbjct 121959 GCGTTGAAAAGAGTAGGGGACCCGTGAGTGAAGTGTCTTTGAGACATGAGGTTGTAAGTC 122018
Query 48666 TCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAACATATA 48724
||||||||| || || || || | || ||||| | || || | ||| | || |
Sbjct 122019 TCAATAACACGTTCGATGTCGTCACCG-TGGATACCAACAGCGACTCTCATGATCAAGTG 122077
Query 48725 TTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTT 48784
|||||||||||| | | |||| || ||| |||| | || ||| ||||||| || ||
Sbjct 122078 CTGAGGTCTTTCAGCGACTTTGCCGTTGATTCTCAACAAGTAAGATCTTTCCAAAGTCTT 122137
Query 48785 AAAACCAAAATAGTTGTA 48802
||||| || ||||||||
Sbjct 122138 GAAACCGAAGTAGTTGTA 122155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108743789120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |