Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 123 7e-23 seq4 116 1e-20 seq2 91.5 4e-13 >seq1 Length=2570408 Score = 123 bits (136), Expect = 7e-23 Identities = 122/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || |||||||||||| ||| ||||| |||||| | |||||| ||| Sbjct 483155 AGAATTTCCTTAAGACGGGGAACACCCAAGGTGACGTT---CTTGGAGGAAACACCGGCA 483211 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | |||||||| |||| || | ||||||| |||||||||||| |||||| ||||| Sbjct 483212 TAATGGAAAGTGTTCAATGTCATCTGAGTAGCAGGCTCACCAATAGATTGTGCGGCAATA 483271 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAATAGACTTCT 301969 | |||||||||||| || || ||||| ||||||| Sbjct 483272 ACACCAACCATTTCACCAGGATGAACAATCGACTTCT 483308 Score = 100 bits (110), Expect = 8e-16 Identities = 199/292 (68%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||| || ||||||| | || | ||||||||||| ||||||||||| Sbjct 483913 ATCATAATGAACCATGATATCTTCCAAAGCTTTAACCAAACGACGCTGGATATAACCAGT 483972 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | ||||| || || |||||||| ||||| | | ||| ||||||| |||||||| Sbjct 483973 TTCTGCAGTTTTCACGGCGGTATCAATAAGACCTTCTCTACCGGCCATAGCGTGGAAGAA 484032 Query 302673 TAGCTCTTCCGGTCGTAGCCC-CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | |||| || | ||| | ||| || ||| ||||||||||||| | ||| | Sbjct 484033 GAATTCTTGAGGAGTCAACCCTCTCAAGTAA-GAGTTCTCAACGAAACCTTTGGACTCAG 484091 Query 302732 GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATAC 302791 | || | || || || || || |||| | | | || | || | || |||| Sbjct 484092 GAGAGTAATCATCTTTAGTGAAATGAGGCAACGAACGATCAGCAAAACCAAAAGGAATAC 484151 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| || ||||| | || || |||| || | | ||| |||||||| || Sbjct 484152 GCTTACCTTCAACAATTTGTTGACCCACACAGGCAGACATTTGCGAAATGTT 484203 >seq4 Length=1381050 Score = 116 bits (128), Expect = 1e-20 Identities = 456/708 (64%), Gaps = 23/708 (3%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| ||||| |||||||||| ||| ||| ||||||| | || || ||||| ||||| Sbjct 121278 TATTCAACAATTTCACAGCACAAGTTGGAAGACTTGATGATACCCAAGTTCTTTTGGTTG 121337 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 | || ||||||||||||| ||||| | ||| |||| || || || || | ||||| Sbjct 121338 GTCTTCTTGTTACAAGCATCTTTGTACAACATGAATGGAGTACCGGTTTCGGTTTGTGCT 121397 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGT-TGTATCTGCCTTCCGA 155809 |||| || ||| | | | || |||| | |||| || |||| ||| Sbjct 121398 TCCAAGATGGAGTACCACAATTTTTGTGCCTTAA-CAGTTTGTCTGCCTCTGTTTTCTCT 121456 Query 155810 CTC--ATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 || || |||| || | | |||| | | || ||||||||| |||| || ||||| Sbjct 121457 TTCGTATCTTTCGTACA-ATTGTTC-GAATTCGTCACCGTAAACATCAGCCAAGCCAGGA 121514 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT------ACACGCTCCATA 155921 || | || | || || | ||| | |||| || ||||||| ||| Sbjct 121515 GCCTCGTTAGGAGAGAAAAGGGTCCA------CTCACCGTTTTGTTCAACACGCTTCATG 121568 Query 155922 AATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCC 155980 || | |||| ||||| || |||||| || |||| || ||| || || | || Sbjct 121569 AAAAGATCAGGAATCCAAAGGGCTGGGAAAAGATCTCTTG-CTCTGATTTCTTCTTTACC 121627 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||||||||| | | || | ||| || || || | || || |||| |||| Sbjct 121628 GTGATTCTTTCTGATGTCGATGAAATCAAAGATGTCCGAGTGCCAAGGTTCCAAGTACAA 121687 Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 || ||| |||| |||||| ||||| || || || || || ||||| || ||||| Sbjct 121688 GGCGAAAGCACCAGGTCTCTTGTTACCACCTTGGTCAACGTAACGGGCAGTGTTGTTGAA 121747 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 |||| | |||||| || ||||| ||||| || || ||||| || ||| | | ||| Sbjct 121748 CACACGGACCATAGGGATGATACCGTTGGAGGTACCGTTGGTACCAGCAATGTAAGCACC 121807 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGC 156217 || || | || || || || | ||||||||||| | | || || || ||| Sbjct 121808 AGTACTACGGATGTTGTGGATGTGCAAACCAATACCACCGGCAGACTTGGAGATCAAAGC 121867 Query 156218 GCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATA 156277 || || | ||| | | | ||||| || || || || |||| ||| | | || | Sbjct 121868 ACAAGTTTTCAAAGTGTCGTAGATACCGTCGATCGAGTCTTCTTTCATGGCGACAAGGAA 121927 Query 156278 GCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 || || | |||||| || || || |||||||| || ||||| Sbjct 121928 ACAAGACGACATTTGAGGAGCAGGAGTACCGGCGTTGAAAAGAGTAGG 121975 >seq2 Length=2224902 Score = 91.5 bits (100), Expect = 4e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 ||||||||| |||||||||||||| | |||||||||||| | ||||| ||||||||| | Sbjct 1875575 AGCACCGTGTGCAATCATACAATCTCTTTCCATTTCACCGAAACGCAAACCACCATCTCT 1875634 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAAC 233364 |||||||| | |||| ||| | ||||| || Sbjct 1875635 GGACCTACCTTCCACTGGTTGTCTCGTTAACAC 1875667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817449138696