Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq4 141 9e-29 seq6 96.9 3e-15 seq1 86.0 6e-12 >seq4 Length=1381050 Score = 141 bits (156), Expect = 9e-29 Identities = 352/521 (68%), Gaps = 19/521 (4%) Strand=Plus/Plus Query 50197 TCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50256 ||||||| |||| || || || || | || |||| ||| ||||| |||| ||||| Sbjct 294181 TCAACGCCATCGACAACATCCCATGCATCAAGAAGAAGGCCGACTGGGCTTTGAGATGGA 294240 Query 50257 CTaaaaacaaaaaa-CTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGT 50315 || || | | ||| || || ||| | || || || |||||| || |||||| Sbjct 294241 TTAGTGACGACGACGCTTTGTTCGGT-GAAAGATTGGTTGCCTTTGCCGCCGTCGAAGGT 294299 Query 50316 GTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCC 50375 | || || || ||| |||||| | || || | | || | ||| | ||||| Sbjct 294300 ATTTTCTTCTCTGGTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTAAGATGCCT 294359 Query 50376 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50435 ||| | || || |||||||||||| | || |||||||| ||||||| |||||||| Sbjct 294360 GGCTTGACTTTCTCCAACGAGTTGATCTGTCGTGACGAAGGTTTGCACACCGACTTTGCC 294419 Query 50436 TGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGACATG 50495 || |||| | | | | | | | ||| | || || ||| ||| | || | | Sbjct 294420 TGCTTGTTGTTCT---CCCACTTGCA---AAACAGACCAAACCCAACCATTGTTGAAAAG 294473 Query 50496 TTCAAA---GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACC-CGTGGC 50551 ||| ||||| || |||||||||||| || ||||| || ||||| || | || Sbjct 294474 ATCATTACCGAAGCTGTTTCCATCGAAAAAGAATTCTTCACCGATGCTTTGCCATGCAGC 294533 Query 50552 ATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATT 50611 |||||||| |||||| ||| |||||||| | ||| ||||||| || || |||||||| Sbjct 294534 -TTGTTGGGTATGAACAAGGACTTGATGTGCCAATACGTTGAGTTCGTCGCCGACAGATT 294592 Query 50612 GTT-GTTGCAGCTGGGACAACCGAAA-TACTATAATG-CACGTAACCCCTTTCCGTTTAT 50668 ||| ||||| || || ||| ||| | ||| || | ||| ||||| || || || Sbjct 294593 GTTGGTTGC--CTTGGGTAACGAAAAGTTCTACAACGTCAC-CAACCCATTCGACTTCAT 294649 Query 50669 GAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAA 50709 | | ||||| || |||| || || || ||||| ||||||| Sbjct 294650 GGAAAACATCTCCTTGGCTGGTAAGACCAACTTCTTCGAAA 294690 >seq6 Length=1120317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||| || || |||| || ||||||||||| |||||||| || Sbjct 961930 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 961871 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| | ||| |||||||| | |||| | |||||| || || || Sbjct 961870 AGAGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGCTGGTCTGGTGGA 961811 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||| || | | || | ||||| | | ||| ||| Sbjct 961810 ATACCTTCCTTGTCTTGGATTTTAGACTTGACGTTGTCGATGGTGTCGGAAGATTCAACT 961751 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||| |||||||| || || || || ||||||||| Sbjct 961750 TCTAAAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATTTGCATA 961703 >seq1 Length=2570408 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | ||| || || |||| || || || ||||| |||||||| || | Sbjct 1137214 CCACCTCTCAATCTCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1137273 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||| ||||| ||| |||||| | |||||| || || || Sbjct 1137274 AAGGTTCTACCATCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGG 1137333 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || || | | || | ||||| | || || ||| Sbjct 1137334 ATACCTTCTTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACT 1137393 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| ||||| || || || ||||| |||||||| Sbjct 1137394 TCCAAGGTAATGGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 1137440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543951145600