Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 131 4e-25 seq2 104 6e-17 >seq4 Length=1381050 Score = 131 bits (144), Expect = 4e-25 Identities = 309/464 (67%), Gaps = 11/464 (2%) Strand=Plus/Minus Query 110703 GTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTT 110759 || |||||| ||||||| || || | ||||||||||| |||| ||| | || Sbjct 121750 GTGTTCAACAACACTGCCCGTTACGTTGACCAAGGTGGTAACAAGAGACCTGGTGCTTTC 121691 Query 110760 GCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAAT 110819 || | || | ||||||||||| || || || ||||| ||| | || | | || ||| Sbjct 121690 GCCTTGTACTTGGAACCTTGGCACTCGGACATCTTTGATTTCATCGACATCAGAAAGAAT 121631 Query 110820 CAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTA 110879 || || |||||| |||||| | ||| | || || | |||||| | ||| | Sbjct 121630 CACGGTAAAGAAGAAATCAGAGCAAGAGATCTTTTCCCAGCCCTTTGGATTCCTGATCTT 121571 Query 110880 TTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCT 110939 |||||||| |||||| || |||| || |||| | ||| | | |||| | ||||| Sbjct 121570 TTCATGAAGCGTGTTGAACAAAACGGTGAGTGGACCCTTTTCTCTCCTAACGAGGCTCCT 121511 Query 110940 GGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAA 110999 || | ||||||| || || | || || ||| | | ||||||| ||| |||| |||| Sbjct 121510 GGCTTGGCTGATGTTTACGGTGACGAATTCGAACAATTGTACGAAAGATACGAAAGAGAA 121451 Query 111000 GGCA-AGTTTCGCAAACAAA---TTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATC 111055 || || ||| ||||| || || ||| || | |||| | ||| | ||| | Sbjct 121450 AACAGAG----GCAGACAAACTGTTAAGGCACAAAAATTGTGGTACTCCATCTTGGAAGC 121395 Query 111056 ACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAA 111115 |||| ||||| || ||||| | || ||||| |||||| | ||| || | || Sbjct 121394 ACAAACCGAAACCGGTACTCCATTCATGTTGTACAAAGATGCTTGTAACAAGAAGACCAA 121335 Query 111116 TCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 |||| ||| || || | || |||||| || |||||||||| Sbjct 121334 CCAAAAGAACTTGGGTATCATCAAGTCTTCCAACTTGTGCTGTG 121291 >seq2 Length=2224902 Score = 104 bits (114), Expect = 6e-17 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 279873 TGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGG 279932 ||||||| || ||||| ||||| ||| || | | |||||||||||| || || ||| Sbjct 1143211 TGGATGGCTTCAAACCCGGTCAGCGAAAGGTTCTCTACAGTTGTTTCAAGAGGAACTTGA 1143270 Query 279933 TAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATC 279992 || ||||| || ||||| || || ||||||||||| ||||| | | ||||||| Sbjct 1143271 GAACTGAAATCAAAGTGGCTCAATTGGCCGGTTATGTTTCTGAACAAACTGACTATCATC 1143330 Query 279993 ACGGTGA--AG-CGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTT 280049 | ||||| || ||| ||||| | ||| | || | || ||| | ||| | | || Sbjct 1143331 ATGGTGAGCAGTCGTTGGTTCAA---ACCATTATTGGCTTGGCGCAAAACTTTGTCGGTT 1143387 Query 280050 CAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCT 280093 | |||||||| ||| ||||| || |||||| ||||||||| Sbjct 1143388 CCAACAACTTGAATATGCTTAAGCCCAATGGTGCTTTTGGTTCT 1143431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812678351688