Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq6 89.7 4e-13 >seq1 Length=2570408 Score = 98.7 bits (108), Expect = 8e-16 Identities = 254/384 (66%), Gaps = 5/384 (1%) Strand=Plus/Plus Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 |||| |||||| ||||| || || ||||| || |||| || || ||||| || | | Sbjct 2441460 ACTCTCTTCATGAACAAGTCGGGGACCCACAATCCGTAGAAGAGGTCTCTTGCCCTCATT 2441519 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAA-ATGTCCGCATGCCAGGG 131766 || ||| | || | ||||| | | || | | | || ||||| ||||||| || Sbjct 2441520 TCCTCTTTGCCG-TGGTTTTTCCGGAGCTCAATCACTTCGAATATGTCGCCATGCCATGG 2441578 Query 131767 TTCCAAATACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAAC 131823 ||||||||||| || | || ||| ||||||| |||||||||| |||| | | Sbjct 2441579 CTCCAAATACACAGCAAACGCACCTGGGCGCTTATTGCCGCCTTGATCGACATACCTGGC 2441638 Query 131824 CATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTT 131883 ||| ||| | || ||||||||||| |||| ||| | | | | || |||| | Sbjct 2441639 TGTGTCATTGAACACCCGCAACATGGGTACCAATCCGCTTGAGGTACCGTTGGAAGTGGA 2441698 Query 131884 AATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTT 131943 ||| || || | ||||| || |||||||| | ||| || || || ||| ||| Sbjct 2441699 AATCAAGGACCCGGTTGCTCTAATGTTGTGAACATGGAGCCCTATGCCACCGGAAGCTTT 2441758 Query 131944 AGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAAT 132003 || || || || |||| || || |||||||| || || | | ||| || | || Sbjct 2441759 TGAAATGAGGGCAGCTTTGTGAAGTGTTTTATAGATGCCATCAATGGAGTCTTCGTCCAT 2441818 Query 132004 GTCGACTAAAAAGCAAGAGGACAA 132027 | | || ||||| |||||||| Sbjct 2441819 TGCCAACAAGAAGCACGAGGACAA 2441842 >seq6 Length=1120317 Score = 89.7 bits (98), Expect = 4e-13 Identities = 166/240 (69%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 27011 ATAATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATAT 27069 ||| |||||| || || | ||| | ||| ||||| || | ||||| || ||||| || | Sbjct 962625 ATATTTATTGGCCACCTCTCAATCTCAAGACCAAGTGGAGGGTAGATTCCTTTTGGATGT 962566 Query 27070 TGTAGTCGCTCAT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGT 27128 ||||||| | ||| || ||||||| | || ||||| ||| | || | | || Sbjct 962565 TGTAGTCAGAGAGAGTTCTGC-CGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGC 962507 Query 27129 TGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCT 27188 || || || || | ||| || || || ||| || || | | | || | ||||| Sbjct 962506 TGGTCTGGTGGAATACCTTCCTTGTCTTGGATTTTAGACTTGACGTTGTCGATGGTGTCG 962447 Query 27189 GTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || ||||||||||| ||| || | || || |||| ||| || ||||||||||||||| Sbjct 962446 GAGGATTCAACTTCTAAAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATTTGCATA 962387 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | ||| ||||| || | || || |||||||| || |||||||| Sbjct 961930 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 961871 Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || ||||||| | || ||||| ||| |||| | | || || || || || Sbjct 961870 AGAGTTCTGC-CGTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGCTGGTCTGGTGG 961812 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || || || ||| || || | | | || | ||||| | | |||||| Sbjct 961811 AATACCTTCCTTGTCTTGGATTTTAGACTTGACGTTGTCGATGGTGTCGGAAGATTCAAC 961752 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| ||| || | || || |||| ||| || ||||||||||||||| Sbjct 961751 TTCTAAAGTGATGGTCTTACCGGTCAAAGTCTTGACAAAGATTTGCATA 961703 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| | ||| ||||| || | ||||| || ||||| || |||||||| Sbjct 962158 CCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAA 962099 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||||||| | ||||||||||| | || | | || || || || || Sbjct 962098 AGAGTTCTACCGTCTTCCAATTGTTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGG 962039 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || ||||||| ||| | | | || | ||||| | | ||||||| Sbjct 962038 ATACCTTCCTTGTCTTGGATCTTGGATTTGACGTTGTCAATGGTGTCGGAAGATTCAACT 961979 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| ||| || | || || |||| || || || |||||||||||| Sbjct 961978 TCTAAAGTGATGGTCTTACCGGTCAAGGTCTTAACGAAGATTTGCATA 961931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934358568896