Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6 174 4e-38 seq1 152 1e-31 seq3 86.0 1e-11 >seq6 Length=1120317 Score = 174 bits (192), Expect = 4e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | |||||| || ||||| ||||||| ||||| || | | |||||| || Sbjct 962603 TCTCAAGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTTCTGCC 962544 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||||||||| | || ||| ||||| || |||||||||||||| Sbjct 962543 GTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGTGGAATACCTTCCTT 962484 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||| || ||| || ||||||||||| |||| ||| || ||||| ||||| Sbjct 962483 GTCTTGGATTTTAGACTTGACGTTGTCGATGGTGTCGGAGGATTCAACTTCTAAAGTGAT 962424 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | || | |||||| Sbjct 962423 GGTCTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 962388 Score = 168 bits (186), Expect = 2e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| || |||||||||||||||| ||||| || | | |||||| || Sbjct 961919 TCTCAAGACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCC 961860 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| |||||||| || | || ||| ||||| || |||||||||||||| Sbjct 961859 GTCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGCTGGTCTGGTGGAATACCTTCCTT 961800 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||| || ||| || ||||||||||| || | ||| || ||||| ||||| Sbjct 961799 GTCTTGGATTTTAGACTTGACGTTGTCGATGGTGTCGGAAGATTCAACTTCTAAAGTGAT 961740 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | || | |||||| Sbjct 961739 GGTCTTACCGGTCAAAGTCTTGACAAAGATTTGCAT 961704 Score = 167 bits (184), Expect = 6e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| ||||| ||||| ||||||| ||||| |||| ||| ||||| || Sbjct 961691 TCTCAAGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCC 961632 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| || || ||||| | || ||| ||||| || |||||||||||||| Sbjct 961631 GTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGAATACCTTCCTT 961572 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| || || ||||||||||| || | ||| || || || || || Sbjct 961571 GTCTTGGATCTTGGATTTAACGTTGTCGATGGTGTCGGAAGATTCGACTTCCAAGGTAAT 961512 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 ||||| || ||||| || || | ||| | |||||||||| Sbjct 961511 GGTCTTACCGGTCAAGGTCTTGACGAAAATTTGCATTTTA 961472 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||||||||||||||| ||||||| ||||| |||| ||| ||||| || Sbjct 962375 TCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCC 962316 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| || || ||||| | || ||| ||||| || |||||||||||||| Sbjct 962315 GTCTTCCAATTGCTTACCGGCAAAGATTAATCTTTGCTGGTCTGGTGGAATACCTTCCTT 962256 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| || || ||| || ||||||||||| || | ||| || || || || || Sbjct 962255 GTCTTGAATTTTAGACTTGACGTTGTCGATGGTGTCGGAAGATTCGACTTCCAAGGTAAT 962196 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || || | ||| | |||||| Sbjct 962195 GGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 962160 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| ||||| ||||| ||||||| ||||| || | | |||||| || Sbjct 962147 TCTCAAGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACC 962088 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | || || || || ||||| | || ||| ||||| || || ||||||||||| Sbjct 962087 GTCTTCCAATTGTTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGGATACCTTCCTT 962028 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| || || || |||||||| || | ||| || ||||| ||||| Sbjct 962027 GTCTTGGATCTTGGATTTGACGTTGTCAATGGTGTCGGAAGATTCAACTTCTAAAGTGAT 961968 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || || | ||| | |||||| Sbjct 961967 GGTCTTACCGGTCAAGGTCTTAACGAAGATTTGCAT 961932 >seq1 Length=2570408 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| || ||||| || ||||||| ||||| || | ||| ||||| || Sbjct 1137225 TCTCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACC 1137284 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| || || ||||| | || ||| ||||| || || |||||||| || Sbjct 1137285 ATCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCTGGTGGGATACCTTCTTT 1137344 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| ||||||||||| |||| || || || || || || Sbjct 1137345 GTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 1137404 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | |||||| || Sbjct 1137405 GGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 1137443 >seq3 Length=1810771 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| |||||||| || || || || |||||||||||||| |||||||| Sbjct 1502159 GAAAATTTGACCATCGGTAATAGAAATGACGTTAGTTGGGATATAAGCAGAGACATCACC 1502100 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||| | || || || || || | || ||| |||| Sbjct 1502099 ACCTTGGGTTTCAATGACTGGCAAAGCAGTCAAAGAACCAGCACC 1502055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531077765552