Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyphopichia_20homilentoma_20[genbank_20GCA_5F001599095.1_202016-03- 01] 8 sequences; 12,176,763 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 138 3e-27 seq1 138 3e-27 >seq6 Length=1120317 Score = 138 bits (152), Expect = 3e-27 Identities = 171/231 (74%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 ||||||||| |||||||||| || || | || || || || || ||| | || || | Sbjct 961471 TTAAAATGC---AAATTTTCGTCAAGACCTTGACCGGTAAGACCATTACCTTGGAAGTCG 961527 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || || ||||||||||| ||||| ||| ||||| || ||||| ||||| || || | Sbjct 961528 AATCTTCCGACACCATCGACAACGTTAAATCCAAGATCCAAGACAAGGAAGGTATTCCAC 961587 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CC 178091 | ||||||||| || | ||||| ||||| || || | ||||| || || || |||| || Sbjct 961588 CAGACCAGCAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGCAGAAC-CTTGTCC 961646 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||| ||||||| ||||| || || || | || |||||| | ||| Sbjct 961647 GACTACAACATCCAAAAGGAATCTACTCTTCACTTGGTCTTGAGATTGAGA 961697 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || || || || ||||| | || || ||| || ||| Sbjct 961707 CAAATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCTTCCGAC 961766 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || || || ||||| ||||| || || || ||||||||| Sbjct 961767 ACCATCGACAACGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAGCAA 961826 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || | ||||| || || |||||| | || || ||| || Sbjct 961827 AGATTGATTTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTCTTTCTGACTACAACATC 961886 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || || | || |||||| | ||| Sbjct 961887 CAAAAAGAATCCACCCTTCACTTGGTCTTGAGATTGAGA 961925 Score = 129 bits (142), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || || ||| | || || ||| || ||| Sbjct 962163 CAAATCTTCGTTAAGACCTTGACTGGTAAGACCATTACCTTGGAAGTCGAATCTTCCGAC 962222 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || ||||| ||||| ||||| || || || ||||||||| Sbjct 962223 ACCATCGACAACGTCAAGTCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGCAA 962282 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| || || | ||||| || || || |||| |||| || ||| | Sbjct 962283 AGATTAATCTTTGCCGGTAAGCAATTGGAAGACGGCAGAAC-CTTGTCCGACTACAACAT 962341 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| ||||| || || || | || |||||| | ||| Sbjct 962342 CCAAAAGGAATCCACTCTCCACTTGGTCTTGAGATTGAGA 962381 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || || || || ||||| | || || ||| ||| ||| Sbjct 962391 CAAATCTTTGTCAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCCTCCGAC 962450 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || || || ||||| ||||| || || || ||||||||| Sbjct 962451 ACCATCGACAACGTCAAGTCTAAAATCCAAGACAAGGAAGGTATTCCACCAGACCAGCAA 962510 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | ||||| || || ||||| | || || ||| || Sbjct 962511 AGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTCTCTCTGACTACAACATC 962570 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | || |||||| | ||| Sbjct 962571 CAAAAGGAATCTACCCTCCACTTGGTCTTGAGATTGAGA 962609 >seq1 Length=2570408 Score = 138 bits (152), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||| | || || || ||| ||| Sbjct 1137437 CAAATTTTCGTCAAGACTTTAACCGGTAAGACCATTACCTTGGAAGTCGAGTCCTCCGAC 1137378 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||||||||| ||||| || ||||||||| Sbjct 1137377 ACCATCGACAATGTCAAGTCCAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAGCAA 1137318 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| || || | |||||||| || || |||| | || || ||| | Sbjct 1137317 AGATTGATCTTTGCCGGTAAGCAATTGGAAGATGGTAGAAC-CTTGTCTGACTACAACAT 1137259 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || || || || || | || |||||| | ||| Sbjct 1137258 CCAAAAGGAGTCCACCCTTCACTTGGTGTTGAGATTGAGA 1137219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731076617552