Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[genbank_20GCA_5F002151565.1_202017-05-19] 7 sequences; 10,682,662 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 seq5 114 1e-20 >seq6 Length=2601250 Score = 114 bits (126), Expect = 1e-20 Identities = 278/410 (68%), Gaps = 17/410 (4%) Strand=Plus/Plus Query 50437 GTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGC 50496 || ||||||||||| || |||||| |||||| || || || | | || | || Sbjct 1394229 GTGGAAGGTGTGTTCTTCTCCGGTTCCTTTGCTGCTATCTTCTGGTTGAAGAAGAAGGGG 1394288 Query 50497 ATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACA 50556 ||||||| || | || || ||||||||||| | | || ||||| | || ||| Sbjct 1394289 TTAATGCCTGGTTTGACTTTCTCTAACGAGTTGATCTGTAGAGATGAAGGTCTACATACA 1394348 Query 50557 GACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATC-ATACGAAACAAT 50615 |||||||| ||| |||| | || | | |||| ||| | | | | | ||| Sbjct 1394349 GACTTTGCCTGT-----CTACTCTTTGCCCATT--TGAAGAATAAACCAAATCCAGAAAT 1394401 Query 50616 TTTGGACATGTTCAA---AGAAGCCGTCGACATCGAAAAAGAGTTT-TTCACGGACGCTT 50671 | |||| | | ||| |||||| ||||| || ||||| ||| | |||| ||| ||| Sbjct 1394402 TGTGGAAAAGATCATTACAGAAGCTGTCGAAATTGAAAA-GAGATACTTCATGGATGCTC 1394460 Query 50672 TACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTG 50731 ||||||| | | ||||| |||||||||||| | ||| | | ||| | || ||||| | Sbjct 1394461 TACCCGTTTCTCTATTGGGTATGAACGCAGACTTAATGAACCAATACGTGGAATTTGTCG 1394520 Query 50732 CAGACAGATTGTTGTTGCAGCTGGGACAAC-CGAAATACTATAATG-CACGTAACCCCTT 50789 | |||||||| ||| | | || || ||| |||||| | |||| ||| ||||| || Sbjct 1394521 CCGACAGATTATTGGT-CGCCTTGGGTAACAAGAAATATTTCAATGTCAC-CAACCCATT 1394578 Query 50790 TCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAA 50839 || ||| | || || || |||| || || || ||||||||||||| Sbjct 1394579 CGATTTCATGGAAAATATCTCCTTGGCTGGTAAGACCAACTTTTTCGAAA 1394628 >seq5 Length=2217437 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||| | ||| | || ||||||||||| |||||||||||| | Sbjct 75644 CCACCTCTTAATCTCAAAACAAGATGCAAAGTGGATTCTTTTTGGATGTTGTAATCGGAC 75703 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | || ||||| ||| | || | | ||| || || ||||| Sbjct 75704 AAGGTTCTTCCATCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGG 75763 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||||| | | ||| ||| Sbjct 75764 ATACCTTCTTTGTCTTGAATCTTCGATTTCACGTTATCGATGGTGTCGGAAGATTCGACT 75823 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| ||||| ||||| ||||||||| Sbjct 75824 TCCAAAGTGATGGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCATA 75871 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||| | ||| | || ||||||||||| ||||| || || | Sbjct 75188 CCACCTCTTAATCTCAAAACAAGATGCAAAGTGGATTCTTTTTGGATGTTATAGTCAGAC 75247 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | || ||||| ||| | || | | ||| || || ||||| Sbjct 75248 AAGGTTCTGCCATCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGG 75307 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||||| | | ||| ||| Sbjct 75308 ATACCTTCTTTGTCTTGAATCTTCGATTTCACGTTATCGATGGTGTCGGAAGATTCGACT 75367 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || ||||| ||||| ||||| ||||||||| Sbjct 75368 TCCAAAGTGATGGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCATA 75415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| ||| | ||| || | ||| | || ||||| ||||| ||||| || || Sbjct 74959 GCCACCTCTTAATCTCAAGACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCAGA 75018 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| | || ||||| ||| | || | | ||| || || ||||| Sbjct 75019 CAAGGTTCTGCCATCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGG 75078 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| || || | | || | ||||| | | ||| || Sbjct 75079 AATACCTTCTTTGTCTTGAATCTTAGACTTGACGTTATCGATGGTGTCAGAAGATTCAAC 75138 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | ||||| ||||| || ||||| ||||| ||||||||| Sbjct 75139 TTCCAAAGTGATGGTCTTACCGGTTAAGGTTTTGACGAAAATTTGCATA 75187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||| || | ||| | || ||||| ||||| ||||| || || | Sbjct 75416 CCACCTCTTAATCTCAAGACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCAGAC 75475 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | || ||||| ||| | || | | ||| || || ||||| Sbjct 75476 AAGGTTCTGCTATCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGAGGA 75535 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 75536 ATACCTTCTTTGTCTTGAATCTTAGACTTGACGTTATCGATGGTGTCGGAAGATTCGACT 75595 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| ||||| || ||||| ||||| ||||||||| Sbjct 75596 TCCAAAGTGATGGTCTTACCGGTTAAGGTTTTGACGAAAATTTGCATA 75643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014355636240