Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[genbank_20GCA_5F002151565.1_202017-05-19] 7 sequences; 10,682,662 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 242 4e-59 seq3 179 4e-40 >seq6 Length=2601250 Score = 242 bits (268), Expect = 4e-59 Identities = 592/884 (67%), Gaps = 15/884 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || |||| ||||| ||||| || || || || || || | || || ||| | Sbjct 1394650 TTTTGGTAATCGGAGACTCTCTTTTCGAAAAAGTTGGTCTTACCAGCCAAGGAGATATTT 1394591 Query 18730 TCCATAAAATCAAATGGATTTTTTACATT-ATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||| ||||| || | ||||| | |||||| || | || || | | | Sbjct 1394590 TCCATGAAATCGAATGGGTTGGTGACATTGAAATATTTCTTGTTACCC-AAGGCGACCAA 1394532 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || ||| || || ||||||| | ||| |||||| | || ||||| || | || Sbjct 1394531 TAATCTGTCGGCGACAAATTCCACGTATTGGTTCATTAAGTCTGCGTTCATACCCAATAG 1394472 Query 18849 TTTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAA 18907 ||| ||||| ||||| | ||| | |||| ||| || | || || |||| || | Sbjct 1394471 AGAAACGGGTAGAGCATCCATGAAGTATCTCTT-TTCAATTTCGACAGCTTCTGTAATGA 1394413 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | | || | ||| ||| || | | ||| ||| | | ||| |||| Sbjct 1394412 TCTTTTCCACAATTTCTGGATTTGGTTTATTCTTCAAATGGGCAAAGAGTAGACAGGCAA 1394353 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || |||||| || || ||||||| ||||| || ||||| || || |||||||||| Sbjct 1394352 AGTCTGTATGTAGACCTTCATCTCTACAGATCAACTCGTTAGAGAAAGTCAAACCAGGCA 1394293 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | | || | || || |||||||| |||| |||||| || || || ||||| | ||||| Sbjct 1394292 TTAACCCCTTCTTCTTCAACCAGAAGATAGCAGCAAAGGAACCGGAGAAGAACACACCTT 1394233 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | || || || |||||||| | |||||| ||| ||| | ||||||| || ||||||||| Sbjct 1394232 CCACAGCAGCGAAAGCAACCAATCTTTCACCA-AACAAGGCATCATCATCTTGAATCCAT 1394174 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | | ||||| |||||||| | ||| | ||| || || || |||| ||| || | | Sbjct 1394173 CTGATAGCCCATTCAGCCTTTTCTTTAATTTGTGGGATAGTTTCGATAGCATTGAACAAA 1394114 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 || || || | || ||| |||| ||| | ||| ||||| || || | |||||| Sbjct 1394113 AACTCACTTTCCTTTGGATCCTTAATATAGGTATCAATCAACAAGGAATAAGTCTCTGAA 1394054 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || ||||| || || || || || || || |||||| | ||||||| | || ||| Sbjct 1394053 TGGATATTCTCCATCATAATTTGGAACCCATAGAAACATTTCGCTTCTGGTGCTTGCACT 1393994 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 ||| | || | || ||||| ||||| ||||| || ||||| || || || || Sbjct 1393993 TCAGCTGAGAAGTTCTCCACCAAGTTTTCGTTAACGATACCATCCGAGGCAGCGAAGAAC 1393934 Query 19387 GCTAATACATGTTTA-ATAAAATGTTTTTC-ATCTGAGGTTAAT----GTATTCCAATCA 19440 || || | | | | |||||| |||| ||| | || || | |||||||| Sbjct 1393933 GCCAA-AATTCTAGAGATAAAAAACCTTTCGTTCTCA--TTCATTCTGTTGTTCCAATCG 1393877 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | | ||| || || ||||| | |||||| | ||||| ||||| || || || | ||| Sbjct 1393876 TGCAAATCCTTGGACAAATCGATTTCTTCTGCAGTCCAGAAAGACGCTTCGGCCCTCTTA 1393817 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || | ||| || ||| | || | || || || | |||||| Sbjct 1393816 TATGCTTCCCAAATCTCATGGTACTTGATTGGGAAGAGAACAAA 1393773 Score = 208 bits (230), Expect = 9e-49 Identities = 413/600 (69%), Gaps = 11/600 (2%) Strand=Plus/Minus Query 47875 TAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTA 47934 |||| || | ||||||||||||||| ||||| ||||| | |||| | || | | | Sbjct 110685 TAAG-GCAACAGATGCTAGATTACAGACAGCAACCTCTTCTGGAGAGCTGTACTCGACAA 110627 Query 47935 TTTCAGCA-CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 |||| ||| || |||||| |||||||| || | ||||| |||||| || Sbjct 110626 TTTC-GCAGCAAAGATTAGATGATTTGATAACGCCGAGATTTTTCTGATTAGATTTTTTA 110568 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 |||||||| || || || ||||| || || |||||| || | ||| || || || Sbjct 110567 TTACATGCATCTTTATAGAGCATGAACGGCACTCCAGTCTCCGTTTGACTTTGAAGTATC 110508 Query 48054 GATTTCCAAACAGTCCTAGC-CTTT-ATAACAGCTCTAGCT-TTATTATCATGTTCGTAT 48110 | ||||| | | || |||| || |||| ||| | || | |||||| Sbjct 110507 TCTGACCAAAT--TTGTTGCGCTTTCATTTTTTTCCTAGGAATTAGT-TCTTTCTCGTAT 110451 Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTA 48170 | ||| | ||| ||||||||||| ||||| || | || |||||| ||||| Sbjct 110450 CTTTCATAAAGCTTATCAAATTCATCACCATAACAATCAGTTAGCCCAGGTGCTTCATCT 110391 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 || | | | |||||| || |||| ||| | || | ||||||| | ||| |||||| Sbjct 110390 GGGGAAAAAATTGACCAGTCTTCATTATTCTCAACCCGCTTCATAAAGAGATCAGGTATC 110331 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 || || || ||| ||||| || | || | ||| || |||||| |||| || | ||| Sbjct 110330 CAGAGGGCATAAAACAAATCTCTTGCCCTCATTTCCTCTTTGCCATGATTCTTTCTCAGT 110271 Query 48291 T-CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 | |||||| ||| ||||| || |||||||| || || |||||||| | | | ||||| Sbjct 110270 TGCAAGAA-GTCAATTATGTCTGCATGCCAGGGCTCCAAATATATACAGAATGCTCCTGG 110212 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || |||||| || |||||||| | ||| |||||||| || || |||| ||||||||||| Sbjct 110211 TCTTTTATTTCCACCTTGATCAACATACCTGGCAGTGTTATTGAAAACCCTTAACATTGG 110152 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 |||| ||||| ||| | || |||| || || ||||| |||| | || | ||||| Sbjct 110151 CACAAGGCCATTGGATGTTCCGTTGGAACCTGAGATATATGCTCCATTTGCACGGATATT 110092 >seq3 Length=1752996 Score = 179 bits (198), Expect = 4e-40 Identities = 538/820 (66%), Gaps = 18/820 (2%) Strand=Plus/Plus Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 |||||| || |||||||||||||| || || || || |||||| | || | ||| | ||| Sbjct 676456 GTTACAAGCATCCTTGTAAAGCATGAACGGAGTACCTGTTTCTGTTTGCGCTTCCAAGAT 676515 Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCT---CTAGCTTTATTATCATGTTCGTA 48109 || | ||| | | ||||| ||| | | ||| | | || |||||| Sbjct 676516 AGCATACCATAATTTTTGGGCCTT---AACGGTTTTTCTACCACGACCTTCTCTTTCGTA 676572 Query 48110 TTTAGTATATA-ACTTCT-CAAATTCATCCCCATACACATTATCTAACCCAGGACATTCA 48167 || ||| | |||| ||||||| || || || | | | ||| || ||| |||| Sbjct 676573 AC--GTTCATACATTTCTTCAAATTCTTCACCGTAAGCGTCAGGTAAACCGGGAGCTTCA 676630 Query 48168 TTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGT 48227 |||||| | | ||| | ||| |||| | |||| ||||| |||| || | ||| || Sbjct 676631 TTAGGAGAGAACAAGGTCCAGTCCTGGTTCTTTTCCACTCTCTTCATGAACAAATCAGGA 676690 Query 48228 ATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA 48287 ||||| | || |||||||| |||| | | |||||| || ||| |||| | | Sbjct 676691 ATCCACAATGCAGGGAATAAATCTCTAGCACGAATTTCTTCCTTTCCATGATTCTTCCTG 676750 Query 48288 AGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCT 48347 | |||| || || | ||||||| |||||||||||| | |||| || | ||||| Sbjct 676751 ATATCAATGAAATCGAAGATATCAGAATGCCATGGTTCAATGTATAAAGCGAAGGCACCT 676810 Query 48348 GGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATT 48407 |||| || ||||| ||||| || | || | ||||| ||||| | || | | |||| Sbjct 676811 GGTCTCTTGTTACCACCTTGGTCAACGTAACGAGCAGTGTTGTTGAAGACACGGATCATT 676870 Query 48408 GGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATA 48467 || | |||||||| || | || ||||| || | ||| ||| ||| ||| | || Sbjct 676871 GGAATGATACCATTAGAAGTTCCGTTGGTACCAGCAATGTAAGAACCAGTAGAACGGATG 676930 Query 48468 TTACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAG 48526 || ||| || || || |||||||| || | || || || | |||||| || | Sbjct 676931 TTGTGAATGTGCAA-CCCAATACCACCAGCAGTCTTTGAGATCATAGCACATTCCTTCAA 676989 Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 |||||| ||||| ||||| || ||| ||| ||||| | | |||||| ||||| Sbjct 676990 GGTATCGTAAATACCTTCGATGGAATCCTCTTTCATAGCAACCAAGAAACAAGATGACAT 677049 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646 ||| |||||| ||| || | || || ||||| ||||| || || | || || ||| Sbjct 677050 TTGAGGATGAGGAGTACCAGCGTTGAACAATGTAGGAGAAGCGTGGGTGAA--ATATCTT 677107 Query 48647 TGATAACAAT---TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTAT 48703 ||| ||| | || || || || | || |||||||| || ||||| | Sbjct 677108 TGA-GACATTAGGTTGTAAGTCTCTAATACTCGTTCTATATCGTTACCGTGAATACCAAC 677166 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763 || || | ||| | ||| | ||| || | |||| ||| || || ||| |||| | Sbjct 677167 AGCCACTCTCATAATCATGTGTTGTGGACGTTCAGCAACCTTACCATCGATTCTCAACAA 677226 Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || ||| || || || ||||| || || ||| || Sbjct 677227 GTAAGAACGTTCTAAGGTCTTGAAACCGAAGTAATTGAAT 677266 Score = 89.7 bits (98), Expect = 6e-13 Identities = 307/474 (65%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || | |||||| | ||||| | | || | || ||||| || || ||||||||| Sbjct 675416 TTATCGATAGTAAATTGAATTGCAGCAGATGCAGCTTGTGTTCTTAGGTAGTACATACCA 675475 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 ||||| ||||| ||||||| ||||||||||| |||||| ||| | ||| Sbjct 675476 GTCTTCAAACCCTTTTTCCATCCGTAGAAATGCATGGAAGTTAACTTACCCATGGTTGGT 675535 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 | |||||| ||||| | |||||| |||||||| | ||| | | || || ||| Sbjct 675536 GCACGAATATGGATATTTAAGGATTGAGATTGATCAATGTAAGCAGCACGGTCGGCCGCC 675595 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || || | |||| | |||| | | ||||| || || || || | | || | ||| Sbjct 675596 ATGTCGATAATATGCTTTTGAGACAATTCCCAAACAGTCTTGTATAGGTCCTTCAATTCT 675655 Query 47214 TCTGGGAGA-TTAGTA--TTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270 | ||||| | || ||| || ||||| || || || | |||| | || ||| || Sbjct 675656 TGTGGGATATTTGGTAAGTTCTGAATGGAACCATTGTCGGCAATAA-TATGAGATTTCAT 675714 Query 47271 tcatttgaccaaagttttc-gttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 || || || | | ||| || | || | | || || |||||||| Sbjct 675715 AGCTTCATCCCAAATACCCAAGTCAACCAAGTCATGCAATAAGTATGGGTTGACAATTTG 675774 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 || || ||||| | || | ||| || || || ||| |||||||| | | |||| Sbjct 675775 GAACTCACCAGACAAAACACGACGAGAGTACATGTTGGATGTGTATGGTTCAAAACATTC 675834 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 || | || |||||||||| || |||||||| ||||| | ||||| || || Sbjct 675835 GTTGTAACCCAAAATTTGAGATGTGGATGCTGTTGGCATTGGAGCAACCAACAA 675888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108750815480