Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[genbank_20GCA_5F002151565.1_202017-05-19] 7 sequences; 10,682,662 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 149 1e-30 seq5 141 2e-28 seq1 136 8e-27 seq4 127 4e-24 >seq6 Length=2601250 Score = 149 bits (164), Expect = 1e-30 Identities = 291/425 (68%), Gaps = 9/425 (2%) Strand=Plus/Minus Query 49647 AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAAT 49706 |||||||| ||||| |||||||| || ||||| |||||| || |||||||||||| Sbjct 1394533 AATAATCTGTCGGCGACAAATTCCACGTATTGGTTCATTAAGTCTGCGTTCATACCCAAT 1394474 Query 49707 AATTTAAATGGTAATGCAT-CATCAATAAATTCtttttctatttctacagcttgtttaat 49765 | || |||| |||| ||| || | || ||||| ||||| ||||||| | |||| Sbjct 1394473 AGAGAAACGGGTAGAGCATCCATGAAGTATCTC-TTTTCAATTTCGACAGCTTCTGTAAT 1394415 Query 49766 tatcataattatattattttttga--taatttatatttaatatgattcgcatatattaaA 49823 ||| | || | |||| | || | ||||| || | ||| ||| | | || | Sbjct 1394414 GATCTT--TTCCACAATTTCTGGATTTGGTTTATTCTTCAAATG---GGCAAAGAGTAGA 1394360 Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| || ||||||| ||| || || ||| | || || || ||| ||||| || Sbjct 1394359 CAGGCAAAGTCTGTATGTAGACCTTCATCTCTACAGATCAACTCGTTAGAGAAAGTCAAA 1394300 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || |||||||| || |||| || | ||| || || | ||||| || || ||||| Sbjct 1394299 CCAGGCATTAACCCCTTCTTCTTCAACCAGAAGATAGCAGCAAAGGAACCGGAGAAGAAC 1394240 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT 50003 | ||| || ||| || || || | | |||| | ||||||| | ||||||| Sbjct 1394239 ACACCTTCCACAGCAGCGAAAGCAACCAATCTTTCACCAAACAAGGCATCATCATCTTGA 1394180 Query 50004 ATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTA 50063 ||||| | |||||||| || || |||| ||| || || ||| |||| ||||| || Sbjct 1394179 ATCCATCTGATAGCCCATTCAGCCTTTTCTTTAATTTGTGGGATAGTTTCGATAGCATTG 1394120 Query 50064 AATAA 50068 || || Sbjct 1394119 AACAA 1394115 >seq5 Length=2217437 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || | ||||||||| | || || ||| ||||| ||| Sbjct 75869 ATACCACCTCTTAATCTCAAGACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCA 75928 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 75929 GACAAGGTTCTGCCATCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGA 75988 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||| || ||| || | || || ||||| Sbjct 75989 GGGATACCTTCTTTGTCTTGAATCTTCGATTTCACGTTATCGATGGTGTCAGAAGATTCA 76048 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| || || ||||||||||| || |||| || || ||||| || Sbjct 76049 ACTTCCAAAGTGATAGTCTTACCAGTTAAAGTCTTAACGAAAATTTGCATGTT 76101 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || | ||| ||||| | ||||| ||| ||||| ||| Sbjct 75185 ATACCACCTCTTAATCTCAAAACAAGATGCAAAGTGGATTCTTTTTGGATGTTATAGTCA 75244 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 75245 GACAAGGTTCTGCCATCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGA 75304 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||| || ||| || | || || ||||| Sbjct 75305 GGGATACCTTCTTTGTCTTGAATCTTCGATTTCACGTTATCGATGGTGTCGGAAGATTCG 75364 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| ||||| |||||||| || ||||| | || || ||||| Sbjct 75365 ACTTCCAAAGTGATGGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 75414 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || | ||| ||||| | ||||| ||| || ||||| Sbjct 75641 ATACCACCTCTTAATCTCAAAACAAGATGCAAAGTGGATTCTTTTTGGATGTTGTAATCG 75700 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | |||| ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 75701 GACAAGGTTCTTCCATCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGA 75760 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||| || ||| || | || || ||||| Sbjct 75761 GGGATACCTTCTTTGTCTTGAATCTTCGATTTCACGTTATCGATGGTGTCGGAAGATTCG 75820 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| ||||| |||||||| || ||||| | || || ||||| Sbjct 75821 ACTTCCAAAGTGATGGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 75870 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || || | ||||||||| | || || ||| ||||| ||| Sbjct 75413 ATACCACCTCTTAATCTCAAGACAAGATGTAAAGTGGATTCCTTTTGGATGTTATAGTCA 75472 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| ||| ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 75473 GACAAGGTTCTGCTATCTTCCAACTGCTTACCTGCAAAAATTAATCTTTGTTGGTCTGGA 75532 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| || || ||| || | || || ||||| Sbjct 75533 GGAATACCTTCTTTGTCTTGAATCTTAGACTTGACGTTATCGATGGTGTCGGAAGATTCG 75592 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| ||||| ||||| ||||| ||||| | || || ||||| Sbjct 75593 ACTTCCAAAGTGATGGTCTTACCGGTTAAGGTTTTGACGAAAATTTGCAT 75642 >seq1 Length=1050866 Score = 136 bits (150), Expect = 8e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| ||||||||||| | | || || || || ||||| | || || ||| | Sbjct 59871 GTTCAATGATACCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGGATGT 59812 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||| || |||| |||| |||||||| |||||||||||||| ||||| |||| Sbjct 59811 TGTAGTCAGACAAGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTT 59752 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | || ||||| || ||||| || ||||| || ||| || ||||| || | || | Sbjct 59751 GGTCTGGTGGGATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCGG 59692 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 | ||||| ||||| | ||| ||||| |||||||| || || || Sbjct 59691 AAGATTCGACTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTT 59649 >seq4 Length=1700866 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || || || ||||| | || || ||| || || || || Sbjct 1531097 ACCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGA 1531038 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| |||||||| |||||||||||||| ||||| ||||| || || || Sbjct 1531037 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGAGG 1530978 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| || ||| || ||||| || | || || ||||| || Sbjct 1530977 AATACCTTCCTTGTCTTGGATCTTAGACTTAACATTGTCAATGGTGTCGGAAGATTCGAC 1530918 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | |||||||| ||||| ||||| ||||| | || || ||||| Sbjct 1530917 TTCCAAGGTAATGGTCTTACCTGTTAAGGTTTTGACGAAAATTTGCAT 1530870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479911704450