Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[genbank_20GCA_5F002151565.1_202017-05-19] 7 sequences; 10,682,662 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6 163 7e-35 seq3 145 2e-29 seq5 91.5 3e-13 >seq6 Length=2601250 Score = 163 bits (180), Expect = 7e-35 Identities = 408/612 (67%), Gaps = 11/612 (2%) Strand=Plus/Plus Query 110514 TTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCT 110573 ||| | || || || ||| | || || | || ||||| || || || ||||| | | Sbjct 109975 TTGTCATCATGTTTCCTTGTTGGGATGGAAGACGATTCCATAGACGGAATTTACAAAACG 110034 Query 110574 CTTAAAGAA-ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGA 110632 ||| | || || ||| | || || || ||||| || | || || |||||| | Sbjct 110035 -TTACATAAGACCGCTTTGATCTCGAAGGCATCTGGTGGTGTCGGGATACACGTTTCAAA 110093 Query 110633 TATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCC 110692 ||| || |||| |||||| ||||| || | || || | || | ||| ||||| || Sbjct 110094 TATCCGTGCAAATGGAGCATATATCTCAGGTTCCAACGGAACATCCAATGGCCTTGTGCC 110153 Query 110693 AATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAA 110749 ||||||||| || ||||| ||||||| | ||||| |||||||||| ||| ||| Sbjct 110154 AATGTTAAGGGTTTTCAATAACACTGCCAGGTATGTTGATCAAGGTGGAAATAAAAGACC 110213 Query 110750 TGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACT 110809 || |||| ||| ||| | || || |||||| |||| ||| |||| ||||| |||| Sbjct 110214 AGGAGCATTCTGTATATATTTGGAGCCCTGGCATGCAGACATAATTGACTTCTTGCAACT 110273 Query 110810 TCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGAT 110869 | || ||||| || || ||| || ||| | ||||| |||||||| | ||||| Sbjct 110274 GAGAAAGAATCATGGCAAAGAGGAAATGAGGGCAAGAGATTTGTTTTATGCCCTCTGGAT 110333 Query 110870 TTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCA 110929 | ||| | || ||||| || ||| | | |||| ||||| || | | || | Sbjct 110334 ACCTGATCTCTTTATGAAGCGGGTTGAGAATAATGAAGACTGGTCAATTTTTTCCCCAGA 110393 Query 110930 TCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATA 110989 | | ||||| ||| ||||| ||||| | || ||||| | ||||| |||| ||| Sbjct 110394 TGAAGCACCTGGGCTAACTGATTGTTATGGTGATGAATTTGATAAGCTTTATGAAAGATA 110453 Query 110990 TGAAAAAGAAGGCAAGTT--TCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATC 111047 || |||||| | | || | | ||| |||| ||| ||| || |||||| | || Sbjct 110454 CGAGAAAGAA--CTAATTCCTAGGAAAAAAATGAAAGCGCAACAAATTTGGTCAGAGATA 110511 Query 111048 CTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAATCG 111106 ||| || ||| || |||||| || | || | ||||||||| ||| |||| Sbjct 110512 CTTCAAAGTCAAACGGAGACTGGAGTGCCGTTCATGCTCTATAAAGATGCAT-GTAATAA 110570 Query 111107 CAAATCTAATCA 111118 ||||||||||| Sbjct 110571 AAAATCTAATCA 110582 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131794 AATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTC 131853 ||||||| | || || ||||||||||| | |||||||||||||||| || ||| Sbjct 1394144 AATTAAAGAAAAGGCTGAATGGGCTATCAGATGGATTCAAGATGATGATGCCTTGTTTGG 1394203 Query 131854 TACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGC 131913 | |||| | || ||||| ||| ||| |||||| | ||||| || ||| | || ||| Sbjct 1394204 TGAAAGATTGGTTGCTTTCGCTGCTGTGGAAGGTGTGTTCTTCTCCGGTTCCTTTGCTGC 1394263 Query 131914 TATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCAT 131973 |||||| ||| | |||||| || || |||||||| | | || || || | || || Sbjct 1394264 TATCTTCTGGTTGAAGAAGAAGGGGTTAATGCCTGGTTTGACTTTCTCTAACGAGTTGAT 1394323 Query 131974 CTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 || |||||||||| | ||||| || ||||| Sbjct 1394324 CTGTAGAGATGAAGGTCTACATACAGACTTTGC 1394356 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 ||||||||| ||||| |||||| | |||||||| || || |||||||||||||||||| Sbjct 500237 GACAATGATCCAGTTCTTTTCAATCGTCAACCATCCCTTCACAAAATGTCTATGATGGCT 500178 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCT 305437 || | ||| ||||| | | | || ||| |||| || || || | | || Sbjct 500177 CACAGAGTGAAAGTCATGCCATATTCTACCTTTAGATTGAACTTATCTGTCACTTCCCCA 500118 Query 305438 TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||||||| ||||| ||||| || ||||||||| | ||||| || ||||| Sbjct 500117 TATAATGCAGATTTCGATGGTGACGAAATGAATTTACATGTTCCCCAATC 500068 >seq3 Length=1752996 Score = 145 bits (160), Expect = 2e-29 Identities = 462/706 (65%), Gaps = 13/706 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 || || |||||||| || | |||||| |||| || | | || |||| || | | Sbjct 677259 TACTTCGGTTTCAAGACCTTAGAACGTTCTTACTTGTTGAGAATCGATGGTAAGGTTGCT 677200 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| ||||||||| || | | || || |||||||||| || | ||||| || Sbjct 677199 GAACGTCCACAACACATGATTATGAGAGTGGCTGTTGGTATTCACGGTAACGATATAGAA 677140 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCTAC 110482 || | || ||| | || | | ||| || | | | || ||| ||||||| Sbjct 677139 CGAGTATTAGAGACTTACAACCTAATGTCTCAAA-GATATTTCACCCACGCTTCTCCTAC 677081 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTA 110541 | || ||||| || ||| | ||| || | ||||| |||||| | | || | Sbjct 677080 ATTGTTCAACGCTGGTACTCCTCATCCTCAAATGTCATCTTG-TTTCTTGGTTGCTATGA 677022 Query 110542 ACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 | || ||||| || ||||||||||| ||| | | || ||| |||| | || || ||| Sbjct 677021 AAGAGGATTCCATCGAAGGTATTTACGATACCTTGAAGGAATGTGCTATGATCTC-AAAG 676963 Query 110602 ACT-CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 ||| |||| || ||||| | ||| |||| | || || || | || | | || || Sbjct 676962 ACTGCTGGTGGTATTGGGTTGCACATTCACAACATCCGTTCTACTGGTTCTTACATTGCT 676903 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | || || |||| | ||| | |||||||| | | ||||||||| ||||||| Sbjct 676902 GGTACCAACGGAACTTCTAATGGTATCATTCCAATGATCCGTGTCTTCAACAACACTGCT 676843 Query 110721 AAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 || || | ||||||||| |||||| || | || ||| | || | ||||| Sbjct 676842 CGTTACGTTGACCAAGGTGGTAACAAGAGACCAGGTGCCTTCGCTTTATACATTGAACCA 676783 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 |||||||| ||||| || || ||| | || | | || ||||| ||| |||||| Sbjct 676782 TGGCATTCTGATATCTTCGATTTCATTGATATCAGGAAGAATCATGGAAAGGAAGAAATT 676723 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 | || | |||||||| |||| |||||||| | ||||| |||||||| | || || Sbjct 676722 CGTGCTAGAGATTTATTCCCTGCATTGTGGATTCCTGATTTGTTCATGAAGAGAGTGGAA 676663 Query 110898 GAAAATGGCATG--TGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTAT 110955 | || || | ||| | | | | |||| || |||| ||| || |||| | | Sbjct 676662 AAGAA--CCAGGACTGGACCTTGTTCTCTCCTAATGAAGCTCCCGGTTTACCTGACGCTT 676605 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGG 111001 | || |||| |||||||| | || ||| || |||| |||||| Sbjct 676604 ACGGTGAAGAATTTGAAGAAATGTATGAACGTTACGAAAGAGAAGG 676559 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGT 279916 |||||||| | | | ||||||||||||||| ||| | || |||| | || Sbjct 1168205 TCTATTCCCTCTGTTTTAGATGGTTTGAAACCTGGTCAGAGGAAAGTTATCTATGCCTGC 1168264 Query 279917 TTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAA 279976 |||||| | || ||| || ||||| || ||||| |||| ||||||||||||||| Sbjct 1168265 TTCAAACGTAATTTGAAAAGTGAAATCAAGGTCGCTCAATTAGGTGGTTATGTTTCAGAA 1168324 Query 279977 CATGCAGGTTATCATCACGGTGAAGCGTCTCT---TCAAGGTGCTATTGTAGGTCTTGCC 280033 ||| |||| |||||||| |||||| ||| | |||| ||||||| ||||| || Sbjct 1168325 CATACAGGGTATCATCATGGTGAACAATCTTTGTATCAA---ACTATTGTCGGTCTAGCT 1168381 Query 280034 CAAGATTTTATGGCTTCAAACAA 280056 || |||||| | | ||| || || Sbjct 1168382 CAGGATTTTGTTGGTTCCAATAA 1168404 >seq5 Length=2217437 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 305323 TGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA 305382 |||| ||| || || || || ||||| || |||||| | | ||||| || | ||| | Sbjct 1899172 TGATGTGGTCCTATTTAACAGACAACCTTCTTTGCATAGATTATCTATTTTGTCGCATTA 1899231 Query 305383 AGTCAAAGTATTATC--TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTAT 305440 | | ||| | || |||| ||||| ||||||||| ||| |||||| || || Sbjct 1899232 TG-CTAAGATTCGTCCTTGGAGA-ACATTCAGATTAAATGAGTGTGTTTGTACACCATAC 1899289 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||||||||| |||||||||||| | ||||| || ||| || Sbjct 1899290 AATGCGGATTTTGATGGTGATGAAATGAATTTACATGTTCCGCAAACA 1899337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812693557727