Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kluyveromyces_20lactis_20[genbank_20GCA_5F002151565.1_202017-05-19] 7 sequences; 10,682,662 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5 105 5e-18 seq4 87.8 1e-12 seq1 84.2 2e-11 >seq5 Length=2217437 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | ||||| || || || | || |||||| || Sbjct 75870 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACCATCACTTTGGAAGTCGAATCTTCC 75811 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || |||| || ||| || || |||||||||||| | || | Sbjct 75810 GAC-----ACCATCGATAACGTGAAATCGAAGATTCAAGACAAAGAAGGTATCCCTCCAG 75756 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | ||||||||||| || || || ||||| || | | | | ||||||||||| Sbjct 75755 ACCAACAAAGATTAATTTTTGCAGGTAAGCAGTTGGAAGATGGAAGAACCTTGTCCGATT 75696 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||||||||||||||| |||||||||| | |||||| Sbjct 75695 ACAACATCCAAAAAGAATCCACTTTGCATCTTGTTTTG 75658 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | ||||| || || || | || |||||| || Sbjct 75414 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACCATCACTTTGGAAGTCGAATCTTCC 75355 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || |||| || ||| || || |||||||||||| | || | Sbjct 75354 GAC-----ACCATCGATAACGTGAAATCGAAGATTCAAGACAAAGAAGGTATCCCTCCAG 75300 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | ||||||||||| || || || ||||| || | | | |||||| || | Sbjct 75299 ACCAACAAAGATTAATTTTTGCAGGTAAGCAGTTGGAAGATGGCAGAACCTTGTCTGACT 75240 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 | |||||||||||||| |||||||||| | |||||| Sbjct 75239 ATAACATCCAAAAAGAATCCACTTTGCATCTTGTTTTG 75202 >seq4 Length=1700866 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || || ||||| | || |||||| || Sbjct 1530870 ATGCAAATTTTCGTCAAAACCTTAACAGGTAAGACCATTACCTTGGAAGTCGAATCTTCC 1530929 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || || ||||| |||||| |||| || | Sbjct 1530930 GACACCATTGACAAT--GTTAAGTCTAAGATCCAAGACAAGGAAGGTATTCCTCCAGACC 1530987 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || || ||||| || || |||||||| || | | | |||||||| |||| Sbjct 1530988 AACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACA 1531047 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||||||||| ||||| ||| | ||| | || || Sbjct 1531048 ACATCCAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 1531096 >seq1 Length=1050866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || || ||| | || || ||||| || || |||||||| Sbjct 59727 GACAAGGAAGGTATCCCACCAGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAA 59786 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | | | |||||| || |||||||||||||| || ||||||||| ||||||||| Sbjct 59787 GATGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACTTTGCACTTGGTTTTG 59846 Query 28003 CGTTTGCGTGGCGG 28016 | ||| | || || Sbjct 59847 AGATTGAGAGGTGG 59860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862369640489